BASAL GANGLIA - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:40.2 nTPM
HPA:40.2 nTPM
GTEx:43.5 nTPM
FANTOM5:141.3 Scaled Tags Per Million
Pig:38.3 nTPM
Mouse:90.2 nTPM
Allen mouse:2.5 Expression energy

BASAL GANGLIA - Annotated protein expression
Pending normal tissue analysis

BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 40.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 1.9
1781 Male, age 74, unknown 10.8
1857 Female, age 85, left hemisphere 2.7
2288 Male, age 75, left hemisphere 1.5
2846 Female, age 79, unknown 0.3
1854 Male, age 80, left hemisphere 0.0
2289 Male, age 61, right hemisphere 0.0
2290 Female, age 72, unknown 0.0
2481 Female, age 94, left hemisphere 0.0
Claustrum
nTPM: 28.7
2491 Male, age 75, both hemispheres 45.2
2284 Female, age 91, both hemispheres 44.2
2198 Male, age 80, both hemispheres 43.8
2568 Male, age 61, both hemispheres 43.4
2645 Female, age 72, unknown 33.9
1956 Male, age 74, unknown 18.4
2392 Female, age 94, both hemispheres 17.3
2292 Female, age 85, both hemispheres 6.9
2196 Female, age 79, unknown 5.3
Globus pallidus, externus
nTPM: 0.0
1996 Male, age 80, right hemisphere 0.0
2395 Male, age 75, both hemispheres 0.0
2567 Female, age 72, unknown 0.0
2646 Male, age 61, right hemisphere 0.0
2772 Female, age 79, unknown 0.0
Globus pallidus, internus
nTPM: 0.0
1818 Male, age 74, unknown 0.0
2037 Male, age 80, right hemisphere 0.0
2111 Female, age 85, right hemisphere 0.0
2287 Male, age 75, right hemisphere 0.0
2483 Female, age 94, right hemisphere 0.0
2566 Female, age 72, unknown 0.0
2778 Female, age 91, both hemispheres 0.0
Nucleus accumbens
nTPM: 3.3
1856 Female, age 91, right hemisphere 17.4
1783 Male, age 74, unknown 9.1
1806 Female, age 85, left hemisphere 0.2
2286 Male, age 75, left hemisphere 0.0
2391 Female, age 94, left hemisphere 0.0
2698 Female, age 72, unknown 0.0
2732 Male, age 80, right hemisphere 0.0
2824 Male, age 61, right hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.0
2393 Male, age 80, right hemisphere 0.0
2484 Female, age 94, left hemisphere 0.0
2569 Male, age 61, both hemispheres 0.0
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 33.6
2029 Male, age 61, right hemisphere 51.3
2775 Male, age 80, right hemisphere 45.0
1812 Female, age 91, both hemispheres 38.3
2195 Female, age 85, both hemispheres 33.5
1979 Male, age 74, unknown 0.0
Olfactory tubercle
nTPM: 40.2
1998 Female, age 91, both hemispheres 48.4
2487 Female, age 94, left hemisphere 46.4
2856 Male, age 75, right hemisphere 33.5
1846 Male, age 80, right hemisphere 32.3
Putamen
nTPM: 2.4
2647 Male, age 75, left hemisphere 7.8
1937 Female, age 91, right hemisphere 3.7
1838 Male, age 80, right hemisphere 3.2
1829 Male, age 74, unknown 1.9
2466 Female, age 79, unknown 0.6
2482 Female, age 94, left hemisphere 0.0
2489 Female, age 72, unknown 0.0
Septal nuclei
nTPM: 19.3
1960 Male, age 74, unknown 43.2
2629 Female, age 94, right hemisphere 34.4
2031 Female, age 72, unknown 31.7
2009 Female, age 91, both hemispheres 20.4
2059 Female, age 85, both hemispheres 5.7
2199 Male, age 80, right hemisphere 0.0
2394 Male, age 61, left hemisphere 0.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 43.5
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 36.7
Samples: 246

Max nTPM: 124.6
Min nTPM: 9.7
Std nTPM: 18.0
Median nTPM: 33.6
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 124.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 81.2
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 78.5
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 76.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 74.3
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 73.1
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 70.4
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 70.3
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 70.0
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 69.3
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 69.1
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 43.5
Samples: 246

Max nTPM: 93.1
Min nTPM: 6.9
Std nTPM: 19.5
Median nTPM: 43.8
GTEX-NL3H-0011-R6a-SM-2I3G8 60-69 years, male 93.1
GTEX-16YQH-0011-R6b-SM-7938T 30-39 years, male 91.3
GTEX-13X6J-0011-R6a-SM-5PNUB 50-59 years, male 86.5
GTEX-Q2AG-0011-R6A-SM-2HML7 40-49 years, female 86.4
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 84.4
GTEX-1B933-0011-R6b-SM-79OOQ 50-59 years, female 81.2
GTEX-QVJO-0011-R6A-SM-2S1QN 60-69 years, female 79.8
GTEX-N7MS-0011-R6a-SM-2HMJ4 60-69 years, male 78.5
GTEX-13VXU-0011-R6a-SM-5SI71 50-59 years, male 78.4
GTEX-1313W-0011-R6a-SM-5K7XO 50-59 years, female 77.9
GTEX-WHSE-0011-R6A-SM-3P5ZP 20-29 years, male 77.5
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 34.5
Samples: 205

Max nTPM: 89.5
Min nTPM: 10.1
Std nTPM: 16.5
Median nTPM: 31.1
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 89.5
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 84.4
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 75.2
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 73.5
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 73.0
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 72.5
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 71.7
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 67.7
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 67.5
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 67.2
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 66.6
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 141.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 108.1
FF:10164-103B2 76 years, female 108.1
Globus pallidus
Scaled Tags Per Million: 48.5
FF:10175-103C4 60 years, female 59.9
FF:10161-103A8 76 years, female 37.0
Nucleus accumbens
Scaled Tags Per Million: 141.3
FF:10037-101F1 23-56 years, mixed 141.3
Putamen
Scaled Tags Per Million: 131.8
FF:10176-103C5 60 years, female 131.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 38.3
Pig sample Sample description nTPM
Caudate
nTPM: 38.3
Samples: 4

Max nTPM: 45.1
Min nTPM: 29.7
Sample A Female 29.7
Sample B Female 39.3
Sample C Male 45.1
Sample D Male 38.9
Putamen
nTPM: 33.5
Samples: 4

Max nTPM: 45.3
Min nTPM: 20.8
Sample A Female 20.8
Sample B Female 29.9
Sample C Male 45.3
Sample D Male 37.9
Septum
nTPM: 35.7
Samples: 4

Max nTPM: 50.6
Min nTPM: 26.7
Sample A Female 33.4
Sample B Female 32.1
Sample C Male 50.6
Sample D Male 26.7
Ventral pallidum
nTPM: 36.0
Samples: 4

Max nTPM: 55.2
Min nTPM: 26.0
Sample A Female 33.0
Sample B Female 26.0
Sample C Male 55.2
Sample D Male 29.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 90.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 90.2
Samples: 4

Max nTPM: 96.4
Min nTPM: 84.1
Sample A Male 85.9
Sample B Male 84.1
Sample C Female 96.4
Sample D Female 94.2
Septum
nTPM: 77.4
Samples: 4

Max nTPM: 85.8
Min nTPM: 72.8
Sample A Male 85.8
Sample B Male 72.8
Sample C Female 74.7
Sample D Female 76.3
Ventral forebrain
nTPM: 88.2
Samples: 4

Max nTPM: 91.1
Min nTPM: 83.1
Sample A Male 83.1
Sample B Male 89.6
Sample C Female 89.1
Sample D Female 91.1

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 2.5
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 2.5
69735795 Antisense, RP_050503_03_E11, Mouse strain C57BL/6J (56 days, male) 4.2
70200848 Antisense, RP_050517_02_G02, Mouse strain C57BL/6J (56 days, male) 0.8
Pallidum
Expression energy: 2.1
69735795 Antisense, RP_050503_03_E11, Mouse strain C57BL/6J (56 days, male) 3.6
70200848 Antisense, RP_050517_02_G02, Mouse strain C57BL/6J (56 days, male) 0.6

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.