MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:62.2 nTPM
HPA:62.2 nTPM
GTEx:83.8 nTPM
FANTOM5:176.5 Scaled Tags Per Million
Pig:43.8 nTPM
Mouse:10.0 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 62.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.8
2828 Female, age 72, unknown 64.3
1870 Female, age 42, unknown 61.9
2411 Female, age 72, unknown 59.9
2586 Male, age 75, left hemisphere 58.6
1833 Male, age 53, unknown 56.4
2666 Male, age 74, left hemisphere 56.0
1830 Male, age 51, unknown 55.7
1827 Male, age 72, unknown 55.3
2019 Male, age 18, unknown 54.9
2219 Male, age 76, both hemispheres 54.8
Dorsal raphe nucleus
nTPM: 62.2
2298 Female, age 72, unknown 63.1
1828 Male, age 53, unknown 62.9
2750 Male, age 76, both hemispheres 62.7
2047 Male, age 72, unknown 62.2
2016 Female, age 72, unknown 60.0
Inferior colliculus
nTPM: 58.4
1848 Female, age 42, unknown 61.1
2097 Female, age 72, unknown 59.1
1890 Male, age 53, unknown 57.6
2849 Male, age 72, unknown 55.6
Median raphe nucleus
nTPM: 57.4
2220 Male, age 76, midline 57.4
Pedunculopontine tegmental nucleus
nTPM: 57.7
2334 Male, age 80, both hemispheres 60.6
1921 Female, age 85, both hemispheres 57.3
2338 Male, age 61, both hemispheres 55.2
Periaquaductal grey, anterior
nTPM: 55.3
1795 Male, age 51, unknown 56.4
1947 Male, age 18, unknown 55.7
2502 Female, age 75, unknown 53.7
Periaquaductal grey, dorsal
nTPM: 57.9
2464 Female, age 72, unknown 59.9
1840 Male, age 53, unknown 59.4
2850 Male, age 76, both hemispheres 57.0
1831 Male, age 72, unknown 55.1
Periaquaductal grey, lateral
nTPM: 56.2
2053 Male, age 18, unknown 61.1
2140 Male, age 76, both hemispheres 54.3
2272 Male, age 74, both hemispheres 53.1
Pretectal area
nTPM: 56.9
1817 Female, age 42, unknown 61.7
2667 Female, age 75, unknown 60.3
2224 Female, age 72, unknown 58.0
2825 Male, age 18, unknown 57.5
1815 Male, age 53, unknown 57.4
2273 Male, age 74, both hemispheres 56.8
1816 Male, age 51, unknown 56.4
1944 Female, age 72, unknown 56.2
2007 Male, age 72, unknown 54.8
2407 Male, age 75, both hemispheres 54.1
2316 Male, age 76, right hemisphere 53.0
Red nucleus
nTPM: 60.4
1821 Female, age 72, unknown 65.2
2503 Female, age 72, unknown 64.5
1865 Male, age 51, unknown 63.6
1954 Female, age 42, unknown 63.3
2769 Male, age 72, unknown 62.2
1904 Male, age 53, unknown 61.9
2823 Male, age 76, right hemisphere 60.5
2227 Male, age 72, unknown 60.4
2725 Female, age 75, unknown 58.6
2588 Male, age 74, left hemisphere 57.3
2785 Male, age 18, unknown 54.3
2584 Male, age 75, left hemisphere 52.4
Substantia nigra
nTPM: 59.8
2241 Male, age 72, unknown 66.2
2699 Male, age 18, unknown 63.9
2409 Female, age 72, unknown 61.0
1916 Female, age 42, unknown 60.3
1851 Male, age 51, unknown 60.2
1889 Female, age 72, unknown 59.4
1941 Male, age 53, unknown 58.1
2665 Male, age 74, both hemispheres 58.1
2590 Female, age 75, unknown 57.1
2583 Male, age 75, right hemisphere 53.7
Superior colliculus
nTPM: 56.2
2587 Male, age 74, left hemisphere 59.6
1995 Male, age 72, unknown 58.6
2668 Female, age 75, unknown 58.2
2087 Female, age 72, unknown 57.9
1913 Female, age 42, unknown 56.4
1839 Male, age 51, unknown 55.5
2261 Male, age 18, unknown 55.1
1796 Male, age 53, unknown 54.4
2664 Male, age 75, both hemispheres 54.2
1895 Male, age 76, right hemisphere 52.7
Ventral tegmental area
nTPM: 59.4
2410 Female, age 72, unknown 61.3
2021 Male, age 53, unknown 60.3
2223 Female, age 72, unknown 59.6
1915 Female, age 42, unknown 59.4
2218 Male, age 76, both hemispheres 58.1
1942 Male, age 51, unknown 57.5

MIDBRAIN - GTEx RNA-seqi
Average nTPM 83.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 83.8
Samples: 139

Max nTPM: 213.8
Min nTPM: 52.6
Std nTPM: 23.8
Median nTPM: 78.4
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 213.8
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 175.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 158.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 141.8
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 141.3
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 126.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 124.4
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 120.9
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 120.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 120.1
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 118.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 176.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 176.5
FF:10158-103A5 76 years, female 176.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 43.8
Pig sample Sample description nTPM
Midbrain
nTPM: 43.4
Samples: 4

Max nTPM: 57.3
Min nTPM: 35.8
Sample A Female 57.3
Sample B Female 41.9
Sample C Male 38.7
Sample D Male 35.8
Periaqueductal gray
nTPM: 37.2
Samples: 3

Max nTPM: 41.3
Min nTPM: 32.7
Sample B Female 41.3
Sample C Male 37.6
Sample D Male 32.7
Substantia nigra
nTPM: 43.8
Samples: 4

Max nTPM: 47.2
Min nTPM: 38.9
Sample A Female 47.2
Sample B Female 38.9
Sample C Male 42.5
Sample D Male 46.4
Superior colliculi
nTPM: 43.0
Samples: 4

Max nTPM: 45.5
Min nTPM: 39.8
Sample A Female 45.5
Sample B Female 39.8
Sample C Male 43.7
Sample D Male 42.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 10.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 10.0
Samples: 4

Max nTPM: 10.5
Min nTPM: 9.5
Sample A Male 10.0
Sample B Male 10.5
Sample C Female 10.0
Sample D Female 9.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
68744988 Antisense, RP_050210_01_A09, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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