We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
HADHA
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • HADHA
TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Medium
Neuronal cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:66.4 nTPM
FANTOM5:124.5 Scaled Tags Per Million
Pig:28.5 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA015536
Glial cells Medium
Neuronal cells Medium



CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 66.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 66.4
Samples: 246

Max nTPM: 123.2
Min nTPM: 29.8
Std nTPM: 18.3
Median nTPM: 64.4
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 123.2
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 121.9
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 121.5
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 116.6
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 115.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 108.6
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 108.5
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 107.2
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 106.9
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 105.1
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 104.5
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 102.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 100.2
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 100.0
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 99.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 98.1
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 97.5
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 96.9
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 96.0
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 95.4
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 94.1
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 92.8
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 91.9
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 91.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 91.6
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 91.6
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 89.6
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 89.2
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 89.1
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 87.4
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 87.3
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 87.0
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 86.4
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 85.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 85.4
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 85.3
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 85.2
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 84.8
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 84.5
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 84.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 83.7
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 83.7
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 83.1
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 82.9
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 82.4
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 81.3
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 81.1
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 81.0
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 80.2
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 80.1
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 79.7
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 79.7
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 79.4
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 79.4
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 79.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 78.6
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 77.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 77.3
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 77.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 76.5
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 76.5
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 76.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 76.2
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 76.1
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 76.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 75.9
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 75.8
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 75.8
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 75.6
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 75.1
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 75.1
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 75.1
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 74.6
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 74.5
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 74.3
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 74.3
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 74.1
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 74.0
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 74.0
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 73.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 72.9
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 72.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 72.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 72.0
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 71.9
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 71.6
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 71.3
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 71.3
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 71.0
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 70.7
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 70.4
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 70.4
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 70.2
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 70.0
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 69.6
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 69.5
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 69.4
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 69.1
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 68.3
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 68.2
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 68.2
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 68.2
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 67.9
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 67.8
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 67.7
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 67.7
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 67.3
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 67.2
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 66.9
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 66.8
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 66.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 66.7
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 66.4
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 66.2
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 66.1
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 66.1
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 66.0
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 65.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 65.4
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 65.3
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 64.9
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 64.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 64.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 64.4
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 63.9
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 63.8
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 63.7
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 63.5
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 63.3
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 63.2
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 63.2
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 62.9
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 62.5
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 62.5
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 62.5
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 62.3
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 62.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 62.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 62.1
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 61.9
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 61.9
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 61.6
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 61.1
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 61.0
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 60.7
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 60.7
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 60.7
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 60.2
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 60.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 60.0
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 59.7
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 59.6
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 59.4
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 59.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 59.0
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 58.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 58.1
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 57.3
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 57.2
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 57.1
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 57.0
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 57.0
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 57.0
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 56.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 56.7
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 56.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 56.3
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 55.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 55.8
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 55.7
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 55.4
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 55.4
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 55.3
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 54.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 54.6
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 54.6
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 54.3
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 54.3
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 54.2
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 54.2
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 54.1
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 54.0
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 53.9
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 53.7
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 53.2
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 52.5
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 52.4
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 52.4
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 52.2
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 52.1
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 51.9
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 51.2
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 50.7
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 50.6
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 50.6
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 50.4
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 50.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 50.0
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 49.6
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 49.6
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 49.4
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 49.3
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 49.1
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 49.0
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 48.7
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 48.4
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 48.0
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 47.6
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 47.5
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 47.2
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 47.1
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 46.9
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 46.5
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 46.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 46.2
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 45.8
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 45.3
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 44.8
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 44.6
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 44.5
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 43.9
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 43.9
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 43.9
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 43.8
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 43.6
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 43.4
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 43.3
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 43.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 42.4
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 42.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 42.0
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 41.9
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 41.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 41.6
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 40.2
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 39.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 39.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 38.3
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 37.3
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 37.2
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 37.2
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 36.5
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 35.9
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 35.0
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 31.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 29.8
Show allShow less

CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 124.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 124.5
FF:10164-103B2 76 years, female 124.5

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 28.5
Pig sample Sample description nTPM
Caudate
nTPM: 28.5
Samples: 4

Max nTPM: 32.9
Min nTPM: 24.3
Sample A Female 24.3
Sample B Female 31.7
Sample C Male 32.9
Sample D Male 24.9

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.