MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:82.9 nTPM
HPA:82.9 nTPM
GTEx:96.3 nTPM
FANTOM5:138.4 Scaled Tags Per Million
Pig:102.8 nTPM
Mouse:88.6 nTPM
Allen mouse:15.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 82.9
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 72.8
2219 Male, age 76, both hemispheres 83.4
1827 Male, age 72, unknown 80.4
2666 Male, age 74, left hemisphere 78.1
2586 Male, age 75, left hemisphere 74.5
1870 Female, age 42, unknown 71.9
2411 Female, age 72, unknown 71.2
1833 Male, age 53, unknown 71.0
2828 Female, age 72, unknown 70.9
1830 Male, age 51, unknown 64.3
2019 Male, age 18, unknown 62.4
Dorsal raphe nucleus
nTPM: 73.2
2298 Female, age 72, unknown 81.2
2047 Male, age 72, unknown 80.8
1828 Male, age 53, unknown 74.7
2750 Male, age 76, both hemispheres 69.1
2016 Female, age 72, unknown 60.4
Inferior colliculus
nTPM: 75.5
2849 Male, age 72, unknown 84.7
1848 Female, age 42, unknown 74.7
2097 Female, age 72, unknown 74.7
1890 Male, age 53, unknown 68.1
Median raphe nucleus
nTPM: 82.9
2220 Male, age 76, midline 82.9
Pedunculopontine tegmental nucleus
nTPM: 71.0
2334 Male, age 80, both hemispheres 78.7
1921 Female, age 85, both hemispheres 77.1
2338 Male, age 61, both hemispheres 57.3
Periaquaductal grey, anterior
nTPM: 74.5
1947 Male, age 18, unknown 81.1
1795 Male, age 51, unknown 78.4
2502 Female, age 75, unknown 64.1
Periaquaductal grey, dorsal
nTPM: 71.2
1840 Male, age 53, unknown 77.4
2850 Male, age 76, both hemispheres 74.3
2464 Female, age 72, unknown 67.4
1831 Male, age 72, unknown 65.5
Periaquaductal grey, lateral
nTPM: 67.6
2272 Male, age 74, both hemispheres 73.1
2140 Male, age 76, both hemispheres 65.4
2053 Male, age 18, unknown 64.1
Pretectal area
nTPM: 73.1
1816 Male, age 51, unknown 82.2
2224 Female, age 72, unknown 79.6
1944 Female, age 72, unknown 77.3
2825 Male, age 18, unknown 77.1
2007 Male, age 72, unknown 76.9
1817 Female, age 42, unknown 76.5
1815 Male, age 53, unknown 71.9
2667 Female, age 75, unknown 71.0
2273 Male, age 74, both hemispheres 66.2
2407 Male, age 75, both hemispheres 64.7
2316 Male, age 76, right hemisphere 61.1
Red nucleus
nTPM: 63.1
2725 Female, age 75, unknown 72.9
2584 Male, age 75, left hemisphere 69.4
1821 Female, age 72, unknown 69.0
1954 Female, age 42, unknown 64.1
2588 Male, age 74, left hemisphere 63.5
2227 Male, age 72, unknown 62.7
2785 Male, age 18, unknown 62.2
2769 Male, age 72, unknown 62.0
2823 Male, age 76, right hemisphere 58.4
2503 Female, age 72, unknown 58.1
1904 Male, age 53, unknown 57.6
1865 Male, age 51, unknown 57.4
Substantia nigra
nTPM: 81.2
1916 Female, age 42, unknown 105.7
1851 Male, age 51, unknown 88.8
1941 Male, age 53, unknown 88.7
2699 Male, age 18, unknown 82.8
2241 Male, age 72, unknown 81.9
2665 Male, age 74, both hemispheres 79.4
1889 Female, age 72, unknown 76.9
2590 Female, age 75, unknown 70.2
2409 Female, age 72, unknown 69.2
2583 Male, age 75, right hemisphere 68.7
Superior colliculus
nTPM: 69.6
2668 Female, age 75, unknown 80.1
1796 Male, age 53, unknown 78.3
1895 Male, age 76, right hemisphere 73.9
2087 Female, age 72, unknown 73.7
1839 Male, age 51, unknown 71.9
2261 Male, age 18, unknown 71.6
2664 Male, age 75, both hemispheres 71.4
2587 Male, age 74, left hemisphere 67.2
1913 Female, age 42, unknown 55.8
1995 Male, age 72, unknown 52.5
Ventral tegmental area
nTPM: 77.8
2218 Male, age 76, both hemispheres 88.0
1915 Female, age 42, unknown 87.1
2410 Female, age 72, unknown 85.7
1942 Male, age 51, unknown 70.0
2021 Male, age 53, unknown 68.9
2223 Female, age 72, unknown 67.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 96.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 96.3
Samples: 139

Max nTPM: 248.8
Min nTPM: 36.9
Std nTPM: 47.0
Median nTPM: 83.6
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 248.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 245.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 235.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 206.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 194.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 188.5
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 186.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 185.8
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 181.6
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 170.9
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 170.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 138.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 138.4
FF:10158-103A5 76 years, female 138.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 102.8
Pig sample Sample description nTPM
Midbrain
nTPM: 93.5
Samples: 4

Max nTPM: 128.0
Min nTPM: 58.5
Sample A Female 58.5
Sample B Female 66.3
Sample C Male 128.0
Sample D Male 121.2
Periaqueductal gray
nTPM: 75.7
Samples: 3

Max nTPM: 98.1
Min nTPM: 63.1
Sample B Female 63.1
Sample C Male 98.1
Sample D Male 65.8
Substantia nigra
nTPM: 75.3
Samples: 4

Max nTPM: 103.4
Min nTPM: 44.1
Sample A Female 102.8
Sample B Female 50.7
Sample C Male 103.4
Sample D Male 44.1
Superior colliculi
nTPM: 102.8
Samples: 4

Max nTPM: 130.2
Min nTPM: 49.3
Sample A Female 117.9
Sample B Female 49.3
Sample C Male 130.2
Sample D Male 113.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 88.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 88.6
Samples: 4

Max nTPM: 92.9
Min nTPM: 84.6
Sample A Male 90.6
Sample B Male 84.6
Sample C Female 92.9
Sample D Female 86.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.9
69015218 Antisense, RP_050310_02_E07, Mouse strain C57BL/6J (56 days, male) 15.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.