MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:74.3 nTPM
HPA:74.3 nTPM
GTEx:37.3 nTPM
FANTOM5:36.6 Scaled Tags Per Million
Pig:26.6 nTPM
Mouse:43.5 nTPM
Allen mouse:1.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 74.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 60.6
2828 Female, age 72, unknown 70.7
2586 Male, age 75, left hemisphere 68.5
1833 Male, age 53, unknown 67.8
2019 Male, age 18, unknown 66.0
1830 Male, age 51, unknown 64.8
2411 Female, age 72, unknown 60.4
1870 Female, age 42, unknown 58.0
2666 Male, age 74, left hemisphere 56.0
1827 Male, age 72, unknown 54.4
2219 Male, age 76, both hemispheres 39.0
Dorsal raphe nucleus
nTPM: 52.1
2016 Female, age 72, unknown 58.9
2750 Male, age 76, both hemispheres 55.7
1828 Male, age 53, unknown 54.1
2047 Male, age 72, unknown 46.2
2298 Female, age 72, unknown 45.8
Inferior colliculus
nTPM: 49.6
2849 Male, age 72, unknown 60.5
1848 Female, age 42, unknown 50.1
2097 Female, age 72, unknown 44.1
1890 Male, age 53, unknown 43.6
Median raphe nucleus
nTPM: 42.7
2220 Male, age 76, midline 42.7
Pedunculopontine tegmental nucleus
nTPM: 45.5
1921 Female, age 85, both hemispheres 49.4
2334 Male, age 80, both hemispheres 48.3
2338 Male, age 61, both hemispheres 38.8
Periaquaductal grey, anterior
nTPM: 50.4
2502 Female, age 75, unknown 58.4
1947 Male, age 18, unknown 47.3
1795 Male, age 51, unknown 45.5
Periaquaductal grey, dorsal
nTPM: 54.2
2850 Male, age 76, both hemispheres 68.4
2464 Female, age 72, unknown 56.1
1840 Male, age 53, unknown 49.4
1831 Male, age 72, unknown 42.9
Periaquaductal grey, lateral
nTPM: 53.5
2140 Male, age 76, both hemispheres 65.3
2053 Male, age 18, unknown 48.1
2272 Male, age 74, both hemispheres 47.1
Pretectal area
nTPM: 50.8
2667 Female, age 75, unknown 61.2
1815 Male, age 53, unknown 60.3
1817 Female, age 42, unknown 60.2
2825 Male, age 18, unknown 57.8
2316 Male, age 76, right hemisphere 56.7
2407 Male, age 75, both hemispheres 51.2
2224 Female, age 72, unknown 46.2
2007 Male, age 72, unknown 45.0
1944 Female, age 72, unknown 41.9
2273 Male, age 74, both hemispheres 39.4
1816 Male, age 51, unknown 38.8
Red nucleus
nTPM: 74.3
1904 Male, age 53, unknown 87.0
2227 Male, age 72, unknown 83.0
1865 Male, age 51, unknown 82.9
2769 Male, age 72, unknown 82.9
1954 Female, age 42, unknown 80.9
1821 Female, age 72, unknown 78.4
2823 Male, age 76, right hemisphere 74.9
2503 Female, age 72, unknown 73.4
2785 Male, age 18, unknown 71.7
2588 Male, age 74, left hemisphere 62.1
2725 Female, age 75, unknown 57.9
2584 Male, age 75, left hemisphere 56.3
Substantia nigra
nTPM: 49.4
2699 Male, age 18, unknown 61.2
2409 Female, age 72, unknown 54.2
1889 Female, age 72, unknown 52.1
2665 Male, age 74, both hemispheres 50.3
1851 Male, age 51, unknown 49.5
2590 Female, age 75, unknown 48.8
2583 Male, age 75, right hemisphere 48.3
2241 Male, age 72, unknown 45.1
1916 Female, age 42, unknown 44.3
1941 Male, age 53, unknown 40.7
Superior colliculus
nTPM: 52.3
1995 Male, age 72, unknown 62.0
1839 Male, age 51, unknown 61.4
1895 Male, age 76, right hemisphere 60.5
1913 Female, age 42, unknown 53.4
2664 Male, age 75, both hemispheres 53.2
2587 Male, age 74, left hemisphere 51.1
1796 Male, age 53, unknown 50.9
2668 Female, age 75, unknown 46.2
2087 Female, age 72, unknown 44.9
2261 Male, age 18, unknown 39.1
Ventral tegmental area
nTPM: 45.1
2410 Female, age 72, unknown 53.3
1915 Female, age 42, unknown 48.4
2218 Male, age 76, both hemispheres 44.8
1942 Male, age 51, unknown 43.9
2021 Male, age 53, unknown 40.2
2223 Female, age 72, unknown 39.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 37.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 37.3
Samples: 139

Max nTPM: 79.2
Min nTPM: 11.8
Std nTPM: 12.2
Median nTPM: 36.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 79.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 74.9
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 73.1
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 70.4
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 68.2
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 66.4
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 60.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 55.9
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 55.3
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 55.1
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 53.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.6
FF:10158-103A5 76 years, female 36.6

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.6
Pig sample Sample description nTPM
Midbrain
nTPM: 19.5
Samples: 4

Max nTPM: 29.1
Min nTPM: 14.5
Sample A Female 29.1
Sample B Female 19.6
Sample C Male 14.9
Sample D Male 14.5
Periaqueductal gray
nTPM: 16.4
Samples: 3

Max nTPM: 16.8
Min nTPM: 15.9
Sample B Female 16.8
Sample C Male 15.9
Sample D Male 16.6
Substantia nigra
nTPM: 22.8
Samples: 4

Max nTPM: 26.1
Min nTPM: 18.7
Sample A Female 22.1
Sample B Female 24.3
Sample C Male 18.7
Sample D Male 26.1
Superior colliculi
nTPM: 26.7
Samples: 4

Max nTPM: 39.0
Min nTPM: 20.4
Sample A Female 24.3
Sample B Female 39.0
Sample C Male 20.4
Sample D Male 22.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 43.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 43.6
Samples: 4

Max nTPM: 46.8
Min nTPM: 39.3
Sample A Male 42.3
Sample B Male 39.3
Sample C Female 45.8
Sample D Female 46.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.5
69735676 Antisense, RP_050503_03_C07, Mouse strain C57BL/6J (56 days, male) 1.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.