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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:47.5 nTPM
GTEx:70.2 nTPM
FANTOM5:170.4 Scaled Tags Per Million
Pig:78.9 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 47.5
Sample id Sample description nTPM
Putamen
nTPM: 47.5
2482 Female, age 94, left hemisphere 50.2
1937 Female, age 91, right hemisphere 49.8
1838 Male, age 80, right hemisphere 48.9
2466 Female, age 79, unknown 48.3
1829 Male, age 74, unknown 47.8
2647 Male, age 75, left hemisphere 44.4
2489 Female, age 72, unknown 43.0

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 70.2
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 70.2
Samples: 205

Max nTPM: 130.1
Min nTPM: 43.7
Std nTPM: 12.7
Median nTPM: 67.3
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 130.1
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 115.1
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 103.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 102.5
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 100.5
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 98.5
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 96.2
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 95.4
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 93.4
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 91.8
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 91.2
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 91.2
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 90.8
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 90.1
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 88.6
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 87.5
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 87.2
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 86.3
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 86.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 85.9
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 85.1
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 85.0
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 85.0
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 84.8
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 84.8
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 84.6
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 84.4
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 84.3
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 84.2
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 84.2
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 84.2
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 84.2
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 83.7
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 83.2
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 82.9
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 82.6
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 82.4
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 82.2
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 81.7
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 81.1
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 81.0
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 80.7
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 80.5
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 80.3
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 80.1
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 80.0
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 80.0
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 78.7
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 78.6
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 78.6
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 78.4
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 78.3
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 78.1
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 77.9
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 77.7
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 77.5
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 77.1
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 76.9
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 76.7
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 76.4
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 76.0
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 75.6
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 75.3
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 75.2
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 75.1
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 74.5
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 74.4
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 74.1
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 74.1
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 73.9
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 73.9
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 73.8
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 73.7
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 73.6
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 73.3
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 73.1
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 72.7
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 72.6
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 72.6
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 72.4
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 72.3
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 72.2
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 71.7
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 71.5
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 71.0
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 70.7
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 70.7
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 70.5
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 70.4
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 70.1
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 69.2
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 69.2
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 69.1
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 68.8
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 68.6
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 68.6
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 68.2
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 67.5
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 67.5
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 67.5
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 67.4
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 67.4
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 67.3
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 67.3
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 67.2
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 67.2
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 67.0
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 66.8
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 66.7
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 66.3
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 66.3
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 66.3
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 66.2
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 66.0
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 65.9
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 65.8
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 65.8
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 65.7
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 65.6
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 65.5
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 65.5
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 65.5
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 65.4
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 65.2
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 64.9
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 64.7
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 64.7
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 64.2
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 64.2
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 64.1
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 64.1
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 63.9
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 63.9
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 63.8
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 63.5
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 63.1
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 63.0
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 63.0
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 62.8
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 62.8
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 62.7
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 62.7
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 62.6
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 62.3
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 61.9
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 61.8
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 61.7
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 61.7
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 61.6
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 61.5
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 61.5
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 61.5
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 61.2
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 61.1
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 60.9
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 60.9
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 60.6
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 60.6
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 60.4
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 60.4
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 60.2
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 60.0
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 60.0
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 59.8
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 59.7
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 59.6
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 59.4
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 59.0
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 58.9
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 57.9
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 57.8
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 57.7
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 57.6
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 57.5
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 57.3
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 57.2
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 57.1
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 57.1
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 57.1
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 57.1
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 57.0
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 56.7
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 56.6
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 56.4
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 56.1
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 56.0
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 55.9
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 55.7
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 55.5
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 55.1
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 55.0
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 54.8
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 54.7
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 54.6
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 54.6
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 54.3
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 54.0
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 53.8
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 53.0
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 52.6
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 51.7
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 51.3
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 46.2
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 44.3
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 43.7
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 170.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 170.4
FF:10176-103C5 60 years, female 170.4

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 78.9
Pig sample Sample description nTPM
Putamen
nTPM: 78.9
Samples: 4

Max nTPM: 119.0
Min nTPM: 62.0
Sample A Female 68.7
Sample B Female 62.0
Sample C Male 119.0
Sample D Male 65.9

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