MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:50.4 nTPM
HPA:50.4 nTPM
GTEx:38.8 nTPM
FANTOM5:36.9 Scaled Tags Per Million
Pig:54.8 nTPM
Mouse:101.9 nTPM
Allen mouse:10.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 50.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 32.5
2666 Male, age 74, left hemisphere 42.4
2411 Female, age 72, unknown 40.0
2019 Male, age 18, unknown 39.4
2219 Male, age 76, both hemispheres 34.9
1827 Male, age 72, unknown 33.1
2828 Female, age 72, unknown 30.5
1870 Female, age 42, unknown 28.5
1830 Male, age 51, unknown 26.3
1833 Male, age 53, unknown 25.6
2586 Male, age 75, left hemisphere 24.6
Dorsal raphe nucleus
nTPM: 41.6
2298 Female, age 72, unknown 58.0
2047 Male, age 72, unknown 50.8
2750 Male, age 76, both hemispheres 40.9
1828 Male, age 53, unknown 30.6
2016 Female, age 72, unknown 27.9
Inferior colliculus
nTPM: 30.6
2097 Female, age 72, unknown 37.0
1848 Female, age 42, unknown 30.9
2849 Male, age 72, unknown 27.8
1890 Male, age 53, unknown 26.6
Median raphe nucleus
nTPM: 50.4
2220 Male, age 76, midline 50.4
Pedunculopontine tegmental nucleus
nTPM: 37.4
2334 Male, age 80, both hemispheres 45.8
1921 Female, age 85, both hemispheres 36.7
2338 Male, age 61, both hemispheres 29.7
Periaquaductal grey, anterior
nTPM: 35.8
1795 Male, age 51, unknown 38.4
1947 Male, age 18, unknown 36.2
2502 Female, age 75, unknown 32.7
Periaquaductal grey, dorsal
nTPM: 26.7
1840 Male, age 53, unknown 32.7
2464 Female, age 72, unknown 29.3
2850 Male, age 76, both hemispheres 25.2
1831 Male, age 72, unknown 19.6
Periaquaductal grey, lateral
nTPM: 29.5
2272 Male, age 74, both hemispheres 41.7
2053 Male, age 18, unknown 23.5
2140 Male, age 76, both hemispheres 23.2
Pretectal area
nTPM: 35.6
2007 Male, age 72, unknown 46.9
2224 Female, age 72, unknown 44.3
2273 Male, age 74, both hemispheres 42.0
1817 Female, age 42, unknown 41.0
1944 Female, age 72, unknown 38.8
1816 Male, age 51, unknown 34.9
2667 Female, age 75, unknown 32.9
1815 Male, age 53, unknown 32.6
2825 Male, age 18, unknown 31.3
2407 Male, age 75, both hemispheres 26.0
2316 Male, age 76, right hemisphere 20.4
Red nucleus
nTPM: 24.4
2785 Male, age 18, unknown 34.2
1821 Female, age 72, unknown 31.2
1865 Male, age 51, unknown 25.8
2227 Male, age 72, unknown 24.7
2725 Female, age 75, unknown 24.4
1954 Female, age 42, unknown 24.1
2769 Male, age 72, unknown 23.9
2588 Male, age 74, left hemisphere 23.0
2584 Male, age 75, left hemisphere 22.8
2503 Female, age 72, unknown 22.3
1904 Male, age 53, unknown 20.7
2823 Male, age 76, right hemisphere 16.0
Substantia nigra
nTPM: 42.3
1941 Male, age 53, unknown 67.3
1916 Female, age 42, unknown 54.7
2241 Male, age 72, unknown 51.7
1851 Male, age 51, unknown 49.1
1889 Female, age 72, unknown 40.0
2409 Female, age 72, unknown 37.9
2665 Male, age 74, both hemispheres 34.6
2699 Male, age 18, unknown 32.0
2590 Female, age 75, unknown 29.3
2583 Male, age 75, right hemisphere 26.1
Superior colliculus
nTPM: 28.4
2668 Female, age 75, unknown 43.5
1796 Male, age 53, unknown 33.5
1895 Male, age 76, right hemisphere 33.0
2087 Female, age 72, unknown 32.3
1839 Male, age 51, unknown 28.9
2587 Male, age 74, left hemisphere 28.2
2261 Male, age 18, unknown 26.4
2664 Male, age 75, both hemispheres 24.4
1913 Female, age 42, unknown 17.5
1995 Male, age 72, unknown 16.9
Ventral tegmental area
nTPM: 38.1
2410 Female, age 72, unknown 46.8
2218 Male, age 76, both hemispheres 43.4
1915 Female, age 42, unknown 43.3
2021 Male, age 53, unknown 34.0
1942 Male, age 51, unknown 31.1
2223 Female, age 72, unknown 30.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 38.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 38.8
Samples: 139

Max nTPM: 265.5
Min nTPM: 8.1
Std nTPM: 33.6
Median nTPM: 28.4
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 265.5
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 175.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 153.4
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 138.3
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 106.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 102.7
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 94.1
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 84.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 81.9
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 78.9
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 77.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 36.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 36.9
FF:10158-103A5 76 years, female 36.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 54.8
Pig sample Sample description nTPM
Midbrain
nTPM: 36.7
Samples: 4

Max nTPM: 48.4
Min nTPM: 26.0
Sample A Female 26.0
Sample B Female 36.8
Sample C Male 48.4
Sample D Male 35.4
Periaqueductal gray
nTPM: 31.2
Samples: 3

Max nTPM: 41.7
Min nTPM: 24.3
Sample B Female 24.3
Sample C Male 41.7
Sample D Male 27.5
Substantia nigra
nTPM: 54.8
Samples: 4

Max nTPM: 82.7
Min nTPM: 14.3
Sample A Female 82.7
Sample B Female 40.3
Sample C Male 81.8
Sample D Male 14.3
Superior colliculi
nTPM: 45.3
Samples: 4

Max nTPM: 57.1
Min nTPM: 33.7
Sample A Female 53.9
Sample B Female 33.7
Sample C Male 57.1
Sample D Male 36.6

MIDBRAIN - Mouse RNA-seqi
Average nTPM 101.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 101.9
Samples: 4

Max nTPM: 109.3
Min nTPM: 93.8
Sample A Male 93.8
Sample B Male 109.3
Sample C Female 101.8
Sample D Female 102.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.9
69549293 Antisense, RP_050126_02_G03, Mouse strain C57BL/6J (56 days, male) 11.4
74881156 Antisense, RP_060220_01_A05, Mouse strain C57BL/6J (56 days, male) 10.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.