MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:41.7 nTPM
HPA:41.7 nTPM
GTEx:70.3 nTPM
FANTOM5:19.0 Scaled Tags Per Million
Pig:32.3 nTPM
Mouse:63.2 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 41.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 39.5
2219 Male, age 76, both hemispheres 42.4
2586 Male, age 75, left hemisphere 41.5
1827 Male, age 72, unknown 40.7
2019 Male, age 18, unknown 40.0
2411 Female, age 72, unknown 39.6
1870 Female, age 42, unknown 39.1
2828 Female, age 72, unknown 39.0
2666 Male, age 74, left hemisphere 38.6
1833 Male, age 53, unknown 37.5
1830 Male, age 51, unknown 36.6
Dorsal raphe nucleus
nTPM: 38.9
2298 Female, age 72, unknown 41.3
2047 Male, age 72, unknown 39.7
2750 Male, age 76, both hemispheres 39.6
1828 Male, age 53, unknown 38.2
2016 Female, age 72, unknown 35.9
Inferior colliculus
nTPM: 38.4
1890 Male, age 53, unknown 39.3
2097 Female, age 72, unknown 38.7
1848 Female, age 42, unknown 38.6
2849 Male, age 72, unknown 36.9
Median raphe nucleus
nTPM: 39.4
2220 Male, age 76, midline 39.4
Pedunculopontine tegmental nucleus
nTPM: 40.4
2338 Male, age 61, both hemispheres 41.8
2334 Male, age 80, both hemispheres 40.3
1921 Female, age 85, both hemispheres 39.0
Periaquaductal grey, anterior
nTPM: 39.7
1795 Male, age 51, unknown 41.1
1947 Male, age 18, unknown 39.6
2502 Female, age 75, unknown 38.4
Periaquaductal grey, dorsal
nTPM: 36.7
1840 Male, age 53, unknown 37.6
2850 Male, age 76, both hemispheres 37.4
2464 Female, age 72, unknown 36.4
1831 Male, age 72, unknown 35.4
Periaquaductal grey, lateral
nTPM: 38.4
2272 Male, age 74, both hemispheres 39.9
2053 Male, age 18, unknown 38.3
2140 Male, age 76, both hemispheres 36.9
Pretectal area
nTPM: 40.9
2667 Female, age 75, unknown 43.9
1944 Female, age 72, unknown 43.6
1816 Male, age 51, unknown 43.5
2007 Male, age 72, unknown 43.5
1817 Female, age 42, unknown 42.8
1815 Male, age 53, unknown 41.3
2273 Male, age 74, both hemispheres 40.3
2224 Female, age 72, unknown 39.3
2407 Male, age 75, both hemispheres 39.1
2825 Male, age 18, unknown 37.9
2316 Male, age 76, right hemisphere 35.1
Red nucleus
nTPM: 38.0
1821 Female, age 72, unknown 39.0
1904 Male, age 53, unknown 38.9
2725 Female, age 75, unknown 38.9
1954 Female, age 42, unknown 38.5
2503 Female, age 72, unknown 38.5
2785 Male, age 18, unknown 38.4
1865 Male, age 51, unknown 38.2
2227 Male, age 72, unknown 37.8
2823 Male, age 76, right hemisphere 37.5
2584 Male, age 75, left hemisphere 36.9
2769 Male, age 72, unknown 36.9
2588 Male, age 74, left hemisphere 36.6
Substantia nigra
nTPM: 41.7
1916 Female, age 42, unknown 51.1
1851 Male, age 51, unknown 44.9
1889 Female, age 72, unknown 44.2
2241 Male, age 72, unknown 42.4
2699 Male, age 18, unknown 42.4
1941 Male, age 53, unknown 42.3
2583 Male, age 75, right hemisphere 38.0
2665 Male, age 74, both hemispheres 37.8
2590 Female, age 75, unknown 37.7
2409 Female, age 72, unknown 36.2
Superior colliculus
nTPM: 39.2
2087 Female, age 72, unknown 41.8
1796 Male, age 53, unknown 41.6
2668 Female, age 75, unknown 40.1
2261 Male, age 18, unknown 40.0
1895 Male, age 76, right hemisphere 38.9
2587 Male, age 74, left hemisphere 38.4
1913 Female, age 42, unknown 38.3
1995 Male, age 72, unknown 38.3
2664 Male, age 75, both hemispheres 37.7
1839 Male, age 51, unknown 36.5
Ventral tegmental area
nTPM: 41.2
1915 Female, age 42, unknown 44.2
2410 Female, age 72, unknown 43.8
2218 Male, age 76, both hemispheres 43.2
1942 Male, age 51, unknown 39.8
2223 Female, age 72, unknown 39.5
2021 Male, age 53, unknown 36.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 70.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 70.3
Samples: 139

Max nTPM: 131.5
Min nTPM: 33.1
Std nTPM: 17.8
Median nTPM: 67.4
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 131.5
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 118.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 112.7
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 112.7
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 111.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 110.9
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 101.3
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 99.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 98.8
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 97.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 97.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 19.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 19.0
FF:10158-103A5 76 years, female 19.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.3
Pig sample Sample description nTPM
Midbrain
nTPM: 26.8
Samples: 4

Max nTPM: 30.5
Min nTPM: 23.5
Sample A Female 29.0
Sample B Female 23.5
Sample C Male 30.5
Sample D Male 24.0
Periaqueductal gray
nTPM: 17.8
Samples: 3

Max nTPM: 20.3
Min nTPM: 15.4
Sample B Female 17.7
Sample C Male 20.3
Sample D Male 15.4
Substantia nigra
nTPM: 26.6
Samples: 4

Max nTPM: 41.4
Min nTPM: 16.8
Sample A Female 41.4
Sample B Female 20.5
Sample C Male 27.6
Sample D Male 16.8
Superior colliculi
nTPM: 32.2
Samples: 4

Max nTPM: 42.3
Min nTPM: 25.4
Sample A Female 42.3
Sample B Female 25.4
Sample C Male 34.5
Sample D Male 26.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 63.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 63.2
Samples: 4

Max nTPM: 69.2
Min nTPM: 59.3
Sample A Male 69.2
Sample B Male 59.8
Sample C Female 59.3
Sample D Female 64.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
68191414 Antisense, RP_041129_01_B05, Mouse strain C57BL/6J (56 days, male) 1.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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