MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:54.2 nTPM
HPA:54.2 nTPM
GTEx:52.2 nTPM
FANTOM5:2.3 Scaled Tags Per Million
Pig:40.7 nTPM
Mouse:92.3 nTPM
Allen mouse:15.4 Expression energy

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 54.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 27.7
2666 Male, age 74, left hemisphere 71.4
2219 Male, age 76, both hemispheres 44.4
2411 Female, age 72, unknown 41.4
1827 Male, age 72, unknown 26.0
1870 Female, age 42, unknown 25.5
1833 Male, age 53, unknown 20.8
1830 Male, age 51, unknown 17.5
2828 Female, age 72, unknown 17.2
2586 Male, age 75, left hemisphere 12.8
2019 Male, age 18, unknown 0.0
Dorsal raphe nucleus
nTPM: 42.4
2298 Female, age 72, unknown 59.3
2047 Male, age 72, unknown 53.3
1828 Male, age 53, unknown 41.5
2750 Male, age 76, both hemispheres 38.3
2016 Female, age 72, unknown 19.4
Inferior colliculus
nTPM: 23.6
2097 Female, age 72, unknown 27.5
2849 Male, age 72, unknown 24.9
1848 Female, age 42, unknown 24.1
1890 Male, age 53, unknown 17.7
Median raphe nucleus
nTPM: 54.2
2220 Male, age 76, midline 54.2
Pedunculopontine tegmental nucleus
nTPM: 37.9
1921 Female, age 85, both hemispheres 62.5
2334 Male, age 80, both hemispheres 39.1
2338 Male, age 61, both hemispheres 12.2
Periaquaductal grey, anterior
nTPM: 49.6
1947 Male, age 18, unknown 63.8
2502 Female, age 75, unknown 46.5
1795 Male, age 51, unknown 38.6
Periaquaductal grey, dorsal
nTPM: 25.9
1840 Male, age 53, unknown 32.0
2850 Male, age 76, both hemispheres 25.0
1831 Male, age 72, unknown 24.0
2464 Female, age 72, unknown 22.7
Periaquaductal grey, lateral
nTPM: 19.2
2053 Male, age 18, unknown 26.3
2140 Male, age 76, both hemispheres 18.9
2272 Male, age 74, both hemispheres 12.2
Pretectal area
nTPM: 16.6
2224 Female, age 72, unknown 41.9
2825 Male, age 18, unknown 41.0
2667 Female, age 75, unknown 19.6
1816 Male, age 51, unknown 14.8
2007 Male, age 72, unknown 14.5
2316 Male, age 76, right hemisphere 14.2
2407 Male, age 75, both hemispheres 9.0
1815 Male, age 53, unknown 8.7
1944 Female, age 72, unknown 8.6
2273 Male, age 74, both hemispheres 6.6
1817 Female, age 42, unknown 3.5
Red nucleus
nTPM: 9.9
1821 Female, age 72, unknown 19.0
2227 Male, age 72, unknown 16.8
2769 Male, age 72, unknown 16.5
1954 Female, age 42, unknown 12.9
2584 Male, age 75, left hemisphere 12.3
2823 Male, age 76, right hemisphere 11.0
1904 Male, age 53, unknown 9.7
1865 Male, age 51, unknown 7.1
2503 Female, age 72, unknown 7.0
2588 Male, age 74, left hemisphere 5.7
2725 Female, age 75, unknown 1.3
2785 Male, age 18, unknown 0.0
Substantia nigra
nTPM: 42.8
1916 Female, age 42, unknown 94.0
1851 Male, age 51, unknown 52.9
2241 Male, age 72, unknown 52.8
2699 Male, age 18, unknown 52.8
2665 Male, age 74, both hemispheres 50.7
1941 Male, age 53, unknown 47.0
2409 Female, age 72, unknown 34.4
1889 Female, age 72, unknown 25.9
2583 Male, age 75, right hemisphere 9.6
2590 Female, age 75, unknown 7.7
Superior colliculus
nTPM: 21.0
2668 Female, age 75, unknown 77.6
2261 Male, age 18, unknown 26.9
1895 Male, age 76, right hemisphere 24.6
1796 Male, age 53, unknown 23.4
1839 Male, age 51, unknown 20.5
2664 Male, age 75, both hemispheres 18.3
2587 Male, age 74, left hemisphere 12.4
2087 Female, age 72, unknown 6.0
1913 Female, age 42, unknown 0.0
1995 Male, age 72, unknown 0.0
Ventral tegmental area
nTPM: 42.1
1915 Female, age 42, unknown 60.6
2218 Male, age 76, both hemispheres 55.8
2410 Female, age 72, unknown 50.9
1942 Male, age 51, unknown 37.0
2021 Male, age 53, unknown 30.2
2223 Female, age 72, unknown 18.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.2
Samples: 139

Max nTPM: 231.0
Min nTPM: 2.2
Std nTPM: 49.9
Median nTPM: 34.0
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 231.0
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 193.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 188.9
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 179.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 173.6
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 170.0
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 163.1
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 160.3
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 151.0
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 137.7
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 137.2
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 2.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 2.3
FF:10158-103A5 76 years, female 2.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 40.7
Pig sample Sample description nTPM
Midbrain
nTPM: 36.1
Samples: 4

Max nTPM: 81.3
Min nTPM: 4.5
Sample A Female 4.5
Sample B Female 23.6
Sample C Male 81.3
Sample D Male 34.9
Periaqueductal gray
nTPM: 25.7
Samples: 3

Max nTPM: 39.4
Min nTPM: 18.7
Sample B Female 19.1
Sample C Male 39.4
Sample D Male 18.7
Substantia nigra
nTPM: 40.7
Samples: 4

Max nTPM: 68.1
Min nTPM: 5.6
Sample A Female 62.4
Sample B Female 26.8
Sample C Male 68.1
Sample D Male 5.6
Superior colliculi
nTPM: 25.8
Samples: 4

Max nTPM: 39.0
Min nTPM: 10.9
Sample A Female 28.3
Sample B Female 10.9
Sample C Male 39.0
Sample D Male 24.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 92.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 92.3
Samples: 4

Max nTPM: 100.2
Min nTPM: 80.6
Sample A Male 97.6
Sample B Male 90.9
Sample C Female 80.6
Sample D Female 100.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 15.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 15.4
68924841 Antisense, RP_050309_01_B04, Mouse strain C57BL/6J (56 days, male) 15.4
70301082 Antisense, RP_050309_01_B04, Mouse strain C57BL/6J (56 days, male) 11.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.