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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Endocrine cells: Medium
Enterocytes: Medium
Enterocytes - Microvilli: High
Goblet cells: Medium
Paneth cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:2806.6 nTPM
HPA:2757.6 nTPM
GTEx:2806.6 nTPM
FANTOM5:3864.4 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA041602Antibody CAB020769
Endocrine cells Medium-
Enterocytes Medium-
Enterocytes - Microvilli High-
Glandular cells -Medium
Goblet cells Medium-
Paneth cells Not detected-





SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 2757.6
overview
Male, age 65
Small intestine sample 232
nTPM: 2972.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 3511.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 2326.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 2219

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 2806.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 2806.6
Samples: 187

Max nTPM: 5361.7
Min nTPM: 1375.2
Std nTPM: 914.7
Median nTPM: 2646.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 5361.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 5312.3
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 5223.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 5182.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 5099.5
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 5025.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 4975.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 4949.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 4916.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 4894.7
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 4501.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 4498.9
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 4329.1
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 4323.6
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 4286.6
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 4269.5
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 4166.4
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 4108.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 4086.0
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 4003.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 3992.5
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 3988.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 3983.2
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 3957.7
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 3934.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 3858.5
GTEX-1122O-1326-SM-5H11F 60-69 years, female 3850.5
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 3766.6
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 3760.3
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 3685.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 3681.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 3680.5
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 3665.0
GTEX-1192X-2526-SM-59868 50-59 years, male 3661.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 3653.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 3646.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 3582.8
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 3554.3
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 3506.4
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 3451.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 3450.7
GTEX-14PKU-1626-SM-6871C 40-49 years, female 3449.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 3420.4
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 3410.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 3405.5
GTEX-111YS-1426-SM-5GID8 60-69 years, male 3374.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 3364.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 3323.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 3276.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 3231.6
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 3230.0
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 3222.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 3190.6
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 3155.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 3150.0
GTEX-144GM-1026-SM-79OKU 20-29 years, male 3141.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 3123.9
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 3119.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 3114.6
GTEX-13O61-1326-SM-5KM31 60-69 years, male 3079.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 3063.7
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 3057.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 3036.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 3030.7
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 3023.0
GTEX-13113-1226-SM-5EGHT 60-69 years, female 3016.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 3010.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 3008.5
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 2988.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 2977.0
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 2966.8
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 2959.8
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 2947.3
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 2945.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 2938.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 2921.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 2904.3
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 2882.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 2882.1
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 2878.7
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 2858.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 2846.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 2829.2
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 2817.4
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 2791.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 2779.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 2775.1
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 2767.6
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 2750.5
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 2737.3
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 2736.6
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 2733.1
GTEX-1C475-1426-SM-793CH 40-49 years, female 2679.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 2646.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 2641.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 2603.8
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 2556.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 2535.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 2534.0
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 2528.7
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 2528.2
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 2526.8
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 2506.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 2503.1
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 2490.4
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 2484.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 2474.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 2469.8
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 2451.8
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 2433.8
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 2429.4
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 2405.6
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 2398.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 2395.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 2388.3
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 2372.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 2348.2
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 2332.3
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 2326.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 2320.8
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 2319.7
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 2296.3
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 2292.8
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 2284.1
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 2279.2
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 2265.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 2234.0
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 2222.0
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 2220.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 2213.6
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 2196.7
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 2166.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 2165.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 2137.3
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 2112.8
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 2109.9
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 2099.5
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 2093.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 2088.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 2086.8
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 2066.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 2063.1
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 2053.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 2052.0
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 2051.4
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 2049.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 2044.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 2019.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 2015.4
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 1995.4
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 1991.8
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 1984.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 1982.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 1975.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 1973.9
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 1952.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 1951.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 1945.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 1941.5
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 1940.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 1909.7
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 1878.7
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 1868.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 1854.5
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 1819.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 1815.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 1810.7
GTEX-183FY-1626-SM-793D8 20-29 years, male 1801.3
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 1777.2
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 1768.3
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 1736.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 1710.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 1704.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 1699.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 1689.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 1687.3
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 1679.5
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 1678.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 1582.0
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 1565.5
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 1542.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 1541.3
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 1481.0
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 1387.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 1381.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 1379.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 1375.2
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 3864.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 3864.4
FF:10024-101D6 15,40,85 years, mixed 3864.4

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