MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:10.4 nTPM
HPA:10.4 nTPM
GTEx:16.8 nTPM
FANTOM5:8.9 Scaled Tags Per Million
Pig:26.7 nTPM
Mouse:17.5 nTPM
Allen mouse:1.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 10.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 7.6
1830 Male, age 51, unknown 12.8
1833 Male, age 53, unknown 10.6
2019 Male, age 18, unknown 8.7
2411 Female, age 72, unknown 7.7
2666 Male, age 74, left hemisphere 7.6
2219 Male, age 76, both hemispheres 7.5
1870 Female, age 42, unknown 6.8
2586 Male, age 75, left hemisphere 6.5
2828 Female, age 72, unknown 4.8
1827 Male, age 72, unknown 3.2
Dorsal raphe nucleus
nTPM: 3.5
2750 Male, age 76, both hemispheres 8.5
1828 Male, age 53, unknown 5.6
2016 Female, age 72, unknown 1.8
2047 Male, age 72, unknown 1.5
2298 Female, age 72, unknown 0.0
Inferior colliculus
nTPM: 4.3
1890 Male, age 53, unknown 4.9
2849 Male, age 72, unknown 4.4
1848 Female, age 42, unknown 4.1
2097 Female, age 72, unknown 3.6
Median raphe nucleus
nTPM: 5.9
2220 Male, age 76, midline 5.9
Pedunculopontine tegmental nucleus
nTPM: 5.2
2334 Male, age 80, both hemispheres 6.9
2338 Male, age 61, both hemispheres 4.7
1921 Female, age 85, both hemispheres 4.0
Periaquaductal grey, anterior
nTPM: 4.3
1947 Male, age 18, unknown 6.3
2502 Female, age 75, unknown 5.2
1795 Male, age 51, unknown 1.3
Periaquaductal grey, dorsal
nTPM: 2.2
2464 Female, age 72, unknown 4.7
1831 Male, age 72, unknown 4.1
2850 Male, age 76, both hemispheres 0.1
1840 Male, age 53, unknown 0.0
Periaquaductal grey, lateral
nTPM: 1.8
2272 Male, age 74, both hemispheres 3.2
2053 Male, age 18, unknown 2.4
2140 Male, age 76, both hemispheres 0.0
Pretectal area
nTPM: 4.5
2407 Male, age 75, both hemispheres 8.1
1815 Male, age 53, unknown 8.0
1817 Female, age 42, unknown 5.6
1816 Male, age 51, unknown 4.9
2007 Male, age 72, unknown 4.9
2316 Male, age 76, right hemisphere 4.7
2667 Female, age 75, unknown 4.5
1944 Female, age 72, unknown 3.8
2825 Male, age 18, unknown 3.5
2224 Female, age 72, unknown 1.4
2273 Male, age 74, both hemispheres 0.7
Red nucleus
nTPM: 10.4
2584 Male, age 75, left hemisphere 13.3
1904 Male, age 53, unknown 12.3
1865 Male, age 51, unknown 11.8
2823 Male, age 76, right hemisphere 11.7
1821 Female, age 72, unknown 11.1
1954 Female, age 42, unknown 10.9
2227 Male, age 72, unknown 9.9
2725 Female, age 75, unknown 9.2
2503 Female, age 72, unknown 9.1
2769 Male, age 72, unknown 8.4
2588 Male, age 74, left hemisphere 8.3
2785 Male, age 18, unknown 8.3
Substantia nigra
nTPM: 9.6
2241 Male, age 72, unknown 14.9
2583 Male, age 75, right hemisphere 12.8
1916 Female, age 42, unknown 12.1
1851 Male, age 51, unknown 10.6
2409 Female, age 72, unknown 10.5
2699 Male, age 18, unknown 10.2
2665 Male, age 74, both hemispheres 9.5
2590 Female, age 75, unknown 6.1
1941 Male, age 53, unknown 5.3
1889 Female, age 72, unknown 4.3
Superior colliculus
nTPM: 6.6
2668 Female, age 75, unknown 9.4
1913 Female, age 42, unknown 8.6
1895 Male, age 76, right hemisphere 8.1
1796 Male, age 53, unknown 7.4
1995 Male, age 72, unknown 7.4
1839 Male, age 51, unknown 6.2
2664 Male, age 75, both hemispheres 5.9
2587 Male, age 74, left hemisphere 5.4
2261 Male, age 18, unknown 4.0
2087 Female, age 72, unknown 3.4
Ventral tegmental area
nTPM: 9.0
2223 Female, age 72, unknown 16.7
2218 Male, age 76, both hemispheres 11.3
2410 Female, age 72, unknown 9.5
1915 Female, age 42, unknown 7.5
1942 Male, age 51, unknown 5.0
2021 Male, age 53, unknown 4.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 16.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 16.8
Samples: 139

Max nTPM: 35.1
Min nTPM: 8.6
Std nTPM: 4.5
Median nTPM: 16.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 35.1
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 32.2
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 26.7
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 26.5
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 26.3
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 26.2
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 26.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 25.3
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 25.3
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 24.8
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 24.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 8.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 8.9
FF:10158-103A5 76 years, female 8.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 26.7
Pig sample Sample description nTPM
Midbrain
nTPM: 24.1
Samples: 4

Max nTPM: 35.7
Min nTPM: 18.0
Sample A Female 18.0
Sample B Female 20.2
Sample C Male 35.7
Sample D Male 22.3
Periaqueductal gray
nTPM: 17.7
Samples: 3

Max nTPM: 18.2
Min nTPM: 17.0
Sample B Female 17.8
Sample C Male 18.2
Sample D Male 17.0
Substantia nigra
nTPM: 18.9
Samples: 4

Max nTPM: 20.2
Min nTPM: 16.2
Sample A Female 19.6
Sample B Female 16.2
Sample C Male 20.2
Sample D Male 19.4
Superior colliculi
nTPM: 26.7
Samples: 4

Max nTPM: 33.6
Min nTPM: 21.7
Sample A Female 21.7
Sample B Female 28.5
Sample C Male 33.6
Sample D Male 23.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 17.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 17.5
Samples: 4

Max nTPM: 19.3
Min nTPM: 15.6
Sample A Male 15.6
Sample B Male 17.3
Sample C Female 19.3
Sample D Female 17.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.4
76085742 Antisense, RP_060530_01_F02, Mouse strain C57BL/6J (56 days, male) 2.1
69014848 Antisense, RP_050310_01_G12, Mouse strain C57BL/6J (56 days, male) 0.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.