MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:42.4 nTPM
HPA:42.4 nTPM
GTEx:39.7 nTPM
FANTOM5:23.3 Scaled Tags Per Million
Pig:51.0 nTPM
Mouse:85.8 nTPM
Allen mouse:10.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 42.4
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 38.0
2586 Male, age 75, left hemisphere 54.5
2666 Male, age 74, left hemisphere 44.9
2828 Female, age 72, unknown 44.8
1827 Male, age 72, unknown 44.4
2019 Male, age 18, unknown 38.7
2219 Male, age 76, both hemispheres 33.5
2411 Female, age 72, unknown 32.1
1870 Female, age 42, unknown 31.5
1833 Male, age 53, unknown 28.2
1830 Male, age 51, unknown 27.6
Dorsal raphe nucleus
nTPM: 27.9
1828 Male, age 53, unknown 30.2
2047 Male, age 72, unknown 29.5
2298 Female, age 72, unknown 29.2
2750 Male, age 76, both hemispheres 28.5
2016 Female, age 72, unknown 21.9
Inferior colliculus
nTPM: 35.8
2097 Female, age 72, unknown 39.2
1848 Female, age 42, unknown 38.0
1890 Male, age 53, unknown 35.1
2849 Male, age 72, unknown 31.0
Median raphe nucleus
nTPM: 30.2
2220 Male, age 76, midline 30.2
Pedunculopontine tegmental nucleus
nTPM: 31.0
1921 Female, age 85, both hemispheres 36.1
2334 Male, age 80, both hemispheres 31.1
2338 Male, age 61, both hemispheres 25.7
Periaquaductal grey, anterior
nTPM: 42.4
1947 Male, age 18, unknown 46.1
2502 Female, age 75, unknown 41.7
1795 Male, age 51, unknown 39.4
Periaquaductal grey, dorsal
nTPM: 25.5
2464 Female, age 72, unknown 27.8
1840 Male, age 53, unknown 27.5
1831 Male, age 72, unknown 26.0
2850 Male, age 76, both hemispheres 20.7
Periaquaductal grey, lateral
nTPM: 23.1
2053 Male, age 18, unknown 26.4
2140 Male, age 76, both hemispheres 24.5
2272 Male, age 74, both hemispheres 18.4
Pretectal area
nTPM: 38.9
2007 Male, age 72, unknown 57.7
1816 Male, age 51, unknown 56.5
1944 Female, age 72, unknown 53.9
1817 Female, age 42, unknown 52.0
1815 Male, age 53, unknown 43.2
2407 Male, age 75, both hemispheres 33.5
2667 Female, age 75, unknown 33.5
2825 Male, age 18, unknown 29.6
2316 Male, age 76, right hemisphere 26.6
2224 Female, age 72, unknown 23.7
2273 Male, age 74, both hemispheres 18.0
Red nucleus
nTPM: 30.9
2584 Male, age 75, left hemisphere 42.2
2785 Male, age 18, unknown 38.4
2588 Male, age 74, left hemisphere 35.1
1954 Female, age 42, unknown 32.3
1821 Female, age 72, unknown 31.2
2227 Male, age 72, unknown 30.7
2769 Male, age 72, unknown 29.2
2503 Female, age 72, unknown 28.0
2725 Female, age 75, unknown 28.0
1904 Male, age 53, unknown 27.0
1865 Male, age 51, unknown 24.8
2823 Male, age 76, right hemisphere 23.9
Substantia nigra
nTPM: 38.6
2665 Male, age 74, both hemispheres 49.4
1941 Male, age 53, unknown 47.4
1916 Female, age 42, unknown 46.7
1889 Female, age 72, unknown 45.5
2583 Male, age 75, right hemisphere 42.8
1851 Male, age 51, unknown 41.4
2241 Male, age 72, unknown 32.5
2590 Female, age 75, unknown 31.9
2699 Male, age 18, unknown 25.5
2409 Female, age 72, unknown 22.5
Superior colliculus
nTPM: 37.1
2668 Female, age 75, unknown 51.3
2664 Male, age 75, both hemispheres 46.0
2087 Female, age 72, unknown 42.9
1796 Male, age 53, unknown 40.3
2261 Male, age 18, unknown 40.3
1895 Male, age 76, right hemisphere 39.9
1839 Male, age 51, unknown 34.2
2587 Male, age 74, left hemisphere 26.5
1913 Female, age 42, unknown 26.1
1995 Male, age 72, unknown 23.8
Ventral tegmental area
nTPM: 31.9
2218 Male, age 76, both hemispheres 35.7
1915 Female, age 42, unknown 35.5
2410 Female, age 72, unknown 34.7
1942 Male, age 51, unknown 34.4
2223 Female, age 72, unknown 27.0
2021 Male, age 53, unknown 24.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 39.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 39.7
Samples: 139

Max nTPM: 126.7
Min nTPM: 17.9
Std nTPM: 16.7
Median nTPM: 36.7
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 126.7
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 87.8
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 81.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 81.4
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 81.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 74.8
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 69.1
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 66.5
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 66.3
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 65.8
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 64.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 23.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 23.3
FF:10158-103A5 76 years, female 23.3

MIDBRAIN - Pig RNA-seqi
Average nTPM 51.0
Pig sample Sample description nTPM
Midbrain
nTPM: 44.1
Samples: 4

Max nTPM: 66.4
Min nTPM: 26.6
Sample A Female 26.6
Sample B Female 32.0
Sample C Male 66.4
Sample D Male 51.3
Periaqueductal gray
nTPM: 31.6
Samples: 3

Max nTPM: 36.1
Min nTPM: 27.1
Sample B Female 31.7
Sample C Male 36.1
Sample D Male 27.1
Substantia nigra
nTPM: 34.4
Samples: 4

Max nTPM: 44.6
Min nTPM: 25.9
Sample A Female 44.6
Sample B Female 27.9
Sample C Male 39.3
Sample D Male 25.9
Superior colliculi
nTPM: 51.1
Samples: 4

Max nTPM: 63.3
Min nTPM: 35.3
Sample A Female 51.7
Sample B Female 35.3
Sample C Male 63.3
Sample D Male 53.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 85.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 85.8
Samples: 4

Max nTPM: 88.7
Min nTPM: 82.3
Sample A Male 87.4
Sample B Male 82.3
Sample C Female 88.7
Sample D Female 84.7

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.5
71764425 Antisense, RP_050926_01_B09, Mouse strain C57BL/6J (56 days, male) 10.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
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