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BRAIN PONS AND MEDULLA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PONS AND MEDULLA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:141.2 nTPM
HPA:141.2 nTPM
FANTOM5:152.8 Scaled Tags Per Million
Pig:124.8 nTPM
Mouse:383.1 nTPM

PONS AND MEDULLA - HPA Brain RNA-seq
Max nTPM 141.2
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 131.1
2090 Male, age 80, both hemispheres 134.7
2188 Female, age 91, both hemispheres 132.6
1984 Male, age 76, both hemispheres 129.1
2301 Female, age 85, both hemispheres 128.1
Area postrema
nTPM: 129.7
2799 Male, age 61, both hemispheres 130.6
2054 Male, age 76, both hemispheres 130.3
2306 Male, age 80, both hemispheres 128.1
Cuneate nuclei
nTPM: 133.0
2131 Male, age 76, both hemispheres 133.5
2381 Male, age 80, both hemispheres 133.1
2376 Male, age 61, both hemispheres 132.3
Dorsal cochlear nucleus
nTPM: 133.5
2802 Male, age 74, right hemisphere 136.0
2187 Female, age 91, both hemispheres 135.8
2378 Male, age 80, both hemispheres 132.3
2370 Male, age 61, both hemispheres 132.0
2058 Male, age 76, both hemispheres 131.4
Dorsal medullary reticular nucleus
nTPM: 136.1
2040 Female, age 85, both hemispheres 144.7
2373 Male, age 61, both hemispheres 132.3
2088 Male, age 76, both hemispheres 131.2
Dorsal motor vagal complex
nTPM: 132.9
2133 Female, age 91, both hemispheres 143.1
2000 Male, age 74, unknown 138.2
2813 Female, age 72, unknown 135.8
2844 Male, age 55, unknown 134.3
2643 Male, age 74, both hemispheres 130.9
2797 Male, age 61, both hemispheres 128.3
2185 Male, age 76, both hemispheres 128.0
2807 Female, age 85, both hemispheres 124.4
Dorsal tegmental nucleus
nTPM: 135.7
2083 Male, age 80, both hemispheres 142.8
2326 Male, age 74, both hemispheres 134.9
2358 Male, age 61, both hemispheres 134.0
1936 Male, age 76, left hemisphere 131.2
Dorsolateral tegmental area
nTPM: 135.0
2654 Male, age 80, both hemispheres 143.1
2751 Female, age 85, both hemispheres 138.4
2141 Male, age 76, both hemispheres 133.5
2360 Male, age 74, both hemispheres 132.0
2337 Male, age 61, both hemispheres 127.8
Gigantocellular reticular nuclei, medullary
nTPM: 135.1
1876 Female, age 85, both hemispheres 139.9
2387 Female, age 91, both hemispheres 137.1
2022 Male, age 76, right hemisphere 136.6
2314 Male, age 61, both hemispheres 135.4
2462 Male, age 74, both hemispheres 132.5
2310 Male, age 80, both hemispheres 129.4
Gigantocellular reticular nuclei, pars
nTPM: 134.2
2084 Female, age 85, both hemispheres 141.2
2168 Male, age 76, both hemispheres 139.3
2336 Male, age 61, both hemispheres 131.5
2706 Male, age 80, both hemispheres 130.3
2330 Male, age 80, both hemispheres 128.9
Inferior olive
nTPM: 134.9
2563 Male, age 74, both hemispheres 139.9
2628 Female, age 91, both hemispheres 135.8
2085 Female, age 85, both hemispheres 133.8
2178 Male, age 61, both hemispheres 132.5
2379 Male, age 80, both hemispheres 132.4
Kolliker-Fuse nucleus
nTPM: 135.9
2163 Male, age 80, both hemispheres 139.0
2793 Female, age 91, left hemisphere 137.1
2315 Male, age 76, right hemisphere 131.7
Lateral lemniscal nuclei
nTPM: 133.6
2169 Male, age 76, both hemispheres 142.5
2746 Female, age 85, left hemisphere 135.0
2453 Male, age 74, right hemisphere 132.6
2036 Male, age 80, both hemispheres 129.9
2320 Female, age 91, left hemisphere 128.1
Lateral medullary reticular nucleus
nTPM: 135.6
2044 Male, age 76, both hemispheres 141.6
2374 Male, age 61, both hemispheres 135.7
2305 Male, age 74, both hemispheres 134.8
2804 Female, age 91, both hemispheres 134.7
2190 Female, age 85, both hemispheres 134.4
2852 Male, age 80, both hemispheres 132.5
Lateral parabrachial nucleus
nTPM: 134.4
2139 Female, age 85, right hemisphere 140.3
2013 Male, age 80, both hemispheres 132.8
2792 Male, age 76, both hemispheres 132.4
2790 Male, age 61, both hemispheres 131.9
Lateral vestibular nucleus
nTPM: 134.7
2184 Male, age 76, both hemispheres 134.8
2311 Male, age 80, both hemispheres 134.7
Locus coeruleus
nTPM: 139.2
2123 Female, age 91, both hemispheres 147.9
2014 Male, age 55, unknown 141.2
2788 Male, age 74, unknown 140.2
2720 Male, age 74, both hemispheres 138.6
1980 Male, age 76, both hemispheres 135.8
2162 Male, age 80, both hemispheres 135.7
2317 Female, age 72, unknown 135.4
Medial olivary nucleus
nTPM: 134.5
2138 Female, age 91, both hemispheres 139.5
1943 Male, age 61, both hemispheres 135.0
2851 Male, age 80, both hemispheres 133.9
1962 Male, age 76, both hemispheres 129.7
Medial parabrachial nucleus
nTPM: 135.4
2170 Female, age 91, both hemispheres 141.2
2854 Male, age 80, both hemispheres 138.6
2786 Male, age 76, both hemispheres 134.2
2463 Female, age 85, right hemisphere 131.8
2156 Male, age 61, both hemispheres 131.1
Medial periolivary nuclei
nTPM: 135.6
2063 Male, age 76, both hemispheres 142.0
2171 Female, age 85, both hemispheres 139.9
2791 Male, age 74, right hemisphere 137.3
2081 Male, age 80, both hemispheres 131.0
2458 Female, age 91, both hemispheres 127.7
Medial vestibular nucleus
nTPM: 139.3
2803 Female, age 91, both hemispheres 144.6
2093 Male, age 80, both hemispheres 140.4
2134 Male, age 76, both hemispheres 139.0
2624 Male, age 61, both hemispheres 138.4
2801 Male, age 74, both hemispheres 138.2
2743 Female, age 85, both hemispheres 135.0
Motor facial nucleus
nTPM: 136.0
2062 Male, age 76, both hemispheres 142.3
2365 Male, age 74, right hemisphere 138.9
2126 Male, age 61, both hemispheres 136.1
2697 Female, age 85, both hemispheres 135.6
2795 Female, age 91, both hemispheres 133.4
2327 Male, age 80, both hemispheres 129.7
Motor hypoglossal nucleus
nTPM: 134.6
2125 Female, age 91, both hemispheres 142.2
2132 Female, age 85, both hemispheres 138.7
2182 Male, age 80, both hemispheres 133.6
2461 Male, age 61, both hemispheres 130.4
2277 Male, age 76, both hemispheres 127.9
Motor trigeminal nucleus
nTPM: 133.0
2079 Male, age 80, both hemispheres 135.6
2309 Male, age 76, both hemispheres 135.4
2560 Male, age 74, both hemispheres 134.1
2335 Male, age 61, both hemispheres 130.8
2321 Female, age 91, both hemispheres 129.0
Nuclei of the trapezoid body
nTPM: 137.4
2159 Male, age 61, both hemispheres 146.6
1983 Male, age 76, both hemispheres 142.3
2735 Female, age 85, both hemispheres 136.9
2166 Male, age 80, both hemispheres 132.0
2368 Female, age 91, both hemispheres 128.9
Nucleus ambiguus
nTPM: 136.6
2096 Female, age 85, both hemispheres 140.3
2071 Male, age 76, both hemispheres 132.8
Nucleus cuneatus
nTPM: 130.9
2564 Male, age 74, both hemispheres 138.4
2380 Male, age 80, both hemispheres 131.0
2100 Male, age 76, both hemispheres 130.6
2805 Female, age 91, both hemispheres 129.9
2562 Male, age 61, both hemispheres 128.2
2808 Female, age 85, both hemispheres 127.6
Nucleus gracilis
nTPM: 131.5
2627 Male, age 74, both hemispheres 139.0
2382 Male, age 80, both hemispheres 130.8
2299 Female, age 85, both hemispheres 124.6
Nucleus raphe magnus
nTPM: 137.9
2160 Male, age 61, both hemispheres 155.0
2172 Female, age 85, both hemispheres 138.9
2455 Male, age 74, both hemispheres 137.5
2051 Male, age 76, both hemispheres 134.6
2328 Male, age 80, both hemispheres 131.1
2459 Female, age 91, both hemispheres 130.4
Nucleus raphe obscurus
nTPM: 133.9
2800 Male, age 61, midline 138.5
2845 Female, age 85, midline 137.1
2142 Male, age 76, midline 126.1
Nucleus raphe pallidus
nTPM: 135.9
1924 Male, age 61, midline 141.2
2183 Male, age 80, midline 139.2
2145 Male, age 76, midline 127.2
Nucleus tractus solitarii
nTPM: 128.6
2656 Male, age 76, both hemispheres 132.6
2144 Female, age 91, right hemisphere 132.0
2191 Female, age 85, both hemispheres 126.7
2307 Male, age 80, both hemispheres 122.9
Paramedian reticular nucleus
nTPM: 139.2
2050 Female, age 85, both hemispheres 143.7
2057 Male, age 80, both hemispheres 141.2
2313 Male, age 61, both hemispheres 137.8
2052 Male, age 76, both hemispheres 134.1
Parvicellular reticular nuclei
nTPM: 135.9
2119 Male, age 80, both hemispheres 139.9
2095 Male, age 76, both hemispheres 137.1
2558 Male, age 74, both hemispheres 130.6
Parvicellular reticular nuclei, medullary
nTPM: 138.4
2189 Female, age 91, both hemispheres 141.9
2091 Female, age 85, both hemispheres 140.3
2181 Male, age 80, left hemisphere 133.1
Peritrigeminal nucleus
nTPM: 138.1
2136 Male, age 76, both hemispheres 138.6
2067 Female, age 85, both hemispheres 137.8
2179 Male, age 61, both hemispheres 137.8
Pontine nuclei
nTPM: 141.2
2727 Male, age 61, right hemisphere 152.2
2787 Female, age 85, both hemispheres 149.2
1863 Male, age 55, unknown 148.5
2109 Female, age 72, unknown 139.9
2454 Male, age 74, left hemisphere 138.3
1968 Male, age 76, left hemisphere 137.9
2115 Male, age 80, left hemisphere 132.0
2319 Female, age 91, both hemispheres 131.6
Pontine raphe nucleus
nTPM: 138.1
2122 Female, age 85, midline 140.7
2853 Male, age 76, midline 135.5
Posteroventral cochlear nucleus
nTPM: 134.6
2752 Female, age 85, both hemispheres 139.3
2070 Male, age 76, both hemispheres 134.7
2135 Female, age 91, both hemispheres 134.6
2341 Male, age 80, both hemispheres 133.5
2371 Male, age 61, both hemispheres 130.8
Prepositus hypoglossal nucleus
nTPM: 138.6
2855 Female, age 85, right hemisphere 143.0
2086 Male, age 80, both hemispheres 134.1
Principal sensory trigeminal nucleus
nTPM: 137.7
2158 Male, age 61, both hemispheres 150.9
2008 Male, age 80, left hemisphere 133.8
2367 Female, age 91, left hemisphere 133.6
2324 Male, age 76, both hemispheres 132.7
Reticular pontine nucleus, caudal
nTPM: 134.7
2092 Male, age 76, both hemispheres 139.9
2559 Male, age 74, both hemispheres 136.4
2457 Female, age 91, both hemispheres 133.1
2332 Male, age 80, right hemisphere 129.5
Reticular pontine nucleus, oral
nTPM: 135.9
1939 Male, age 80, both hemispheres 141.1
2167 Male, age 76, both hemispheres 138.5
2012 Female, age 85, both hemispheres 137.5
2366 Female, age 91, both hemispheres 133.6
2361 Male, age 74, both hemispheres 128.9
Reticulotegmental nucleus
nTPM: 135.2
2325 Male, age 76, both hemispheres 138.2
2452 Male, age 74, both hemispheres 135.3
2333 Male, age 80, both hemispheres 133.7
2322 Female, age 91, both hemispheres 133.6
Spinal trigeminal nucleus, caudal
nTPM: 134.3
2390 Female, age 91, both hemispheres 143.9
2447 Male, age 76, both hemispheres 133.3
2642 Male, age 74, both hemispheres 133.1
2312 Male, age 61, both hemispheres 131.0
2308 Male, age 80, both hemispheres 130.4
Spinal trigeminal nucleus, interpolar
nTPM: 140.5
2625 Male, age 61, both hemispheres 148.8
2066 Male, age 76, right hemisphere 146.5
2033 Male, age 80, both hemispheres 136.5
2386 Female, age 85, both hemispheres 135.8
2389 Female, age 91, both hemispheres 134.8
Spinal trigeminal nucleus, oral
nTPM: 133.8
2164 Male, age 80, both hemispheres 135.9
2737 Female, age 85, both hemispheres 133.1
1978 Male, age 76, both hemispheres 132.5
Spinal vestibular nucleus
nTPM: 138.0
2186 Female, age 91, both hemispheres 142.5
2806 Female, age 85, both hemispheres 141.6
2780 Male, age 80, both hemispheres 139.0
2748 Male, age 76, both hemispheres 138.5
2384 Male, age 74, both hemispheres 134.0
2796 Male, age 61, both hemispheres 132.4
Subcoeruleus area
nTPM: 136.4
1958 Male, age 80, both hemispheres 139.5
2323 Female, age 91, left hemisphere 138.4
2369 Female, age 85, left hemisphere 136.2
2451 Male, age 74, both hemispheres 134.4
2089 Male, age 76, left hemisphere 133.6
Superior olive
nTPM: 135.4
1875 Female, age 85, both hemispheres 140.6
2364 Male, age 74, right hemisphere 137.6
2020 Male, age 76, both hemispheres 136.9
2329 Male, age 80, right hemisphere 130.8
2561 Female, age 91, both hemispheres 130.7
Superior vestibular nucleus
nTPM: 136.9
2383 Male, age 74, both hemispheres 138.7
2015 Male, age 80, both hemispheres 137.3
2061 Male, age 76, both hemispheres 134.8
Ventral medullary reticular nucleus
nTPM: 135.2
2060 Male, age 76, both hemispheres 137.8
2372 Male, age 61, both hemispheres 132.6
Ventral periolivary nuclei
nTPM: 134.8
2130 Female, age 85, both hemispheres 137.9
2165 Male, age 80, both hemispheres 137.7
2023 Male, age 76, both hemispheres 135.0
2794 Female, age 91, left hemisphere 128.7
Ventrolateral medulla, A1-C1 cell groups
nTPM: 135.7
2180 Male, age 61, both hemispheres 138.2
1986 Male, age 76, both hemispheres 138.0
2741 Female, age 85, both hemispheres 137.3
2118 Male, age 80, both hemispheres 133.2
2302 Female, age 91, both hemispheres 132.1
Ventrolateral tegmental area, A5 NE cell group
nTPM: 133.7
2840 Female, age 85, both hemispheres 139.4
1959 Male, age 76, both hemispheres 135.3
2161 Male, age 80, both hemispheres 132.9
2359 Male, age 61, both hemispheres 132.8
2456 Female, age 91, both hemispheres 131.6
2449 Male, age 74, both hemispheres 130.2

PONS AND MEDULLA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 152.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 146.7
FF:10165-103B3 76 years, female 148.2
FF:10182-103D2 60 years, female 145.2
Medulla oblongata
Scaled Tags Per Million: 120.6
FF:10038-101F2 18-64 years, mixed 124.1
FF:10174-103C3 60 years, female 120.0
FF:10155-103A2 76 years, female 117.7
Pons
Scaled Tags Per Million: 152.8
FF:10033-101E6 18-54 years, mixed 152.8

PONS AND MEDULLA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 124.8
Pig sample Sample description nTPM
Medulla oblongata
nTPM: 108.8
Samples: 4

Max nTPM: 135.1
Min nTPM: 89.7
Sample A Female 99.0
Sample B Female 111.5
Sample C Male 135.1
Sample D Male 89.7
Pons
nTPM: 124.8
Samples: 4

Max nTPM: 151.1
Min nTPM: 101.2
Sample A Female 106.6
Sample B Female 101.2
Sample C Male 151.1
Sample D Male 140.4

PONS AND MEDULLA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 383.1
Mouse sample Sample description nTPM
Pons and medulla
nTPM: 383.1
Samples: 4

Max nTPM: 388.6
Min nTPM: 378.5
Sample A Male 378.5
Sample B Male 388.6
Sample C Female 385.6
Sample D Female 379.7

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