MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:140.2 nTPM
HPA:140.2 nTPM
GTEx:119.2 nTPM
FANTOM5:132.9 Scaled Tags Per Million
Pig:111.1 nTPM
Mouse:292.3 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 140.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 134.7
2411 Female, age 72, unknown 138.8
1827 Male, age 72, unknown 138.3
1870 Female, age 42, unknown 138.2
2666 Male, age 74, left hemisphere 136.0
2219 Male, age 76, both hemispheres 134.9
2019 Male, age 18, unknown 133.8
2586 Male, age 75, left hemisphere 133.4
1833 Male, age 53, unknown 132.1
2828 Female, age 72, unknown 131.7
1830 Male, age 51, unknown 129.9
Dorsal raphe nucleus
nTPM: 134.5
1828 Male, age 53, unknown 136.9
2047 Male, age 72, unknown 135.6
2298 Female, age 72, unknown 135.4
2750 Male, age 76, both hemispheres 134.3
2016 Female, age 72, unknown 130.2
Inferior colliculus
nTPM: 134.6
2097 Female, age 72, unknown 135.8
1890 Male, age 53, unknown 134.9
2849 Male, age 72, unknown 134.1
1848 Female, age 42, unknown 133.4
Median raphe nucleus
nTPM: 137.9
2220 Male, age 76, midline 137.9
Pedunculopontine tegmental nucleus
nTPM: 137.6
2334 Male, age 80, both hemispheres 138.3
1921 Female, age 85, both hemispheres 137.7
2338 Male, age 61, both hemispheres 136.9
Periaquaductal grey, anterior
nTPM: 134.0
1947 Male, age 18, unknown 135.1
2502 Female, age 75, unknown 134.3
1795 Male, age 51, unknown 132.7
Periaquaductal grey, dorsal
nTPM: 131.4
1840 Male, age 53, unknown 134.9
2464 Female, age 72, unknown 131.7
2850 Male, age 76, both hemispheres 130.5
1831 Male, age 72, unknown 128.8
Periaquaductal grey, lateral
nTPM: 129.7
2053 Male, age 18, unknown 130.2
2140 Male, age 76, both hemispheres 130.1
2272 Male, age 74, both hemispheres 128.7
Pretectal area
nTPM: 135.0
1816 Male, age 51, unknown 142.7
1944 Female, age 72, unknown 140.2
1817 Female, age 42, unknown 139.5
2007 Male, age 72, unknown 139.4
1815 Male, age 53, unknown 135.7
2667 Female, age 75, unknown 133.2
2273 Male, age 74, both hemispheres 132.7
2224 Female, age 72, unknown 132.6
2825 Male, age 18, unknown 132.4
2316 Male, age 76, right hemisphere 128.5
2407 Male, age 75, both hemispheres 127.9
Red nucleus
nTPM: 135.1
1821 Female, age 72, unknown 141.0
2725 Female, age 75, unknown 140.5
2588 Male, age 74, left hemisphere 136.5
2503 Female, age 72, unknown 135.0
1954 Female, age 42, unknown 134.9
1865 Male, age 51, unknown 134.8
2785 Male, age 18, unknown 134.4
2769 Male, age 72, unknown 134.3
1904 Male, age 53, unknown 133.9
2227 Male, age 72, unknown 133.8
2823 Male, age 76, right hemisphere 132.3
2584 Male, age 75, left hemisphere 129.8
Substantia nigra
nTPM: 140.2
1916 Female, age 42, unknown 155.2
1851 Male, age 51, unknown 145.8
2241 Male, age 72, unknown 143.5
1889 Female, age 72, unknown 141.8
2699 Male, age 18, unknown 140.3
2665 Male, age 74, both hemispheres 139.3
1941 Male, age 53, unknown 138.3
2409 Female, age 72, unknown 135.4
2590 Female, age 75, unknown 133.0
2583 Male, age 75, right hemisphere 129.7
Superior colliculus
nTPM: 132.4
1895 Male, age 76, right hemisphere 135.8
2087 Female, age 72, unknown 135.6
2587 Male, age 74, left hemisphere 134.9
1796 Male, age 53, unknown 134.6
2668 Female, age 75, unknown 134.5
2261 Male, age 18, unknown 133.3
1913 Female, age 42, unknown 130.9
1839 Male, age 51, unknown 130.5
2664 Male, age 75, both hemispheres 127.4
1995 Male, age 72, unknown 126.4
Ventral tegmental area
nTPM: 137.3
1915 Female, age 42, unknown 144.1
2410 Female, age 72, unknown 144.0
2218 Male, age 76, both hemispheres 138.2
1942 Male, age 51, unknown 133.3
2223 Female, age 72, unknown 132.6
2021 Male, age 53, unknown 131.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 119.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 119.2
Samples: 139

Max nTPM: 229.7
Min nTPM: 75.7
Std nTPM: 27.5
Median nTPM: 115.4
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 229.7
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 206.8
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 189.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 188.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 187.5
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 178.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 171.6
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 170.4
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 167.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 165.1
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 164.4
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 132.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 132.9
FF:10158-103A5 76 years, female 132.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 111.1
Pig sample Sample description nTPM
Midbrain
nTPM: 104.0
Samples: 4

Max nTPM: 124.5
Min nTPM: 86.7
Sample A Female 110.3
Sample B Female 124.5
Sample C Male 86.7
Sample D Male 94.3
Periaqueductal gray
nTPM: 106.6
Samples: 3

Max nTPM: 119.1
Min nTPM: 86.0
Sample B Female 114.8
Sample C Male 119.1
Sample D Male 86.0
Substantia nigra
nTPM: 111.2
Samples: 4

Max nTPM: 143.1
Min nTPM: 80.6
Sample A Female 143.1
Sample B Female 91.1
Sample C Male 129.8
Sample D Male 80.6
Superior colliculi
nTPM: 109.7
Samples: 4

Max nTPM: 140.9
Min nTPM: 82.3
Sample A Female 140.9
Sample B Female 82.3
Sample C Male 107.0
Sample D Male 108.4

MIDBRAIN - Mouse RNA-seqi
Average nTPM 292.3
Mouse sample Sample description nTPM
Midbrain
nTPM: 292.3
Samples: 4

Max nTPM: 300.9
Min nTPM: 283.1
Sample A Male 300.9
Sample B Male 295.6
Sample C Female 283.1
Sample D Female 289.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
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