MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:4500.0 nTPM
HPA:4500.0 nTPM
GTEx:3602.6 nTPM
FANTOM5:795.8 Scaled Tags Per Million
Pig:1915.6 nTPM

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 4500.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 4378.7
2828 Female, age 72, unknown 4572.7
2586 Male, age 75, left hemisphere 4504.7
2019 Male, age 18, unknown 4438.9
2411 Female, age 72, unknown 4401.8
1827 Male, age 72, unknown 4385.6
1870 Female, age 42, unknown 4357.3
1833 Male, age 53, unknown 4341.7
1830 Male, age 51, unknown 4286.7
2219 Male, age 76, both hemispheres 4268.8
2666 Male, age 74, left hemisphere 4228.8
Dorsal raphe nucleus
nTPM: 4476.0
2298 Female, age 72, unknown 4540.1
2047 Male, age 72, unknown 4492.6
1828 Male, age 53, unknown 4484.1
2750 Male, age 76, both hemispheres 4451.5
2016 Female, age 72, unknown 4411.5
Inferior colliculus
nTPM: 4418.0
2097 Female, age 72, unknown 4541.1
1890 Male, age 53, unknown 4468.4
1848 Female, age 42, unknown 4380.8
2849 Male, age 72, unknown 4281.5
Median raphe nucleus
nTPM: 4394.4
2220 Male, age 76, midline 4394.4
Pedunculopontine tegmental nucleus
nTPM: 4377.8
2334 Male, age 80, both hemispheres 4415.8
1921 Female, age 85, both hemispheres 4407.0
2338 Male, age 61, both hemispheres 4310.7
Periaquaductal grey, anterior
nTPM: 4365.6
1795 Male, age 51, unknown 4415.2
1947 Male, age 18, unknown 4345.4
2502 Female, age 75, unknown 4336.1
Periaquaductal grey, dorsal
nTPM: 4379.0
2464 Female, age 72, unknown 4423.9
1840 Male, age 53, unknown 4422.3
2850 Male, age 76, both hemispheres 4337.9
1831 Male, age 72, unknown 4332.1
Periaquaductal grey, lateral
nTPM: 4331.0
2140 Male, age 76, both hemispheres 4392.0
2053 Male, age 18, unknown 4352.8
2272 Male, age 74, both hemispheres 4248.1
Pretectal area
nTPM: 4479.1
1817 Female, age 42, unknown 4614.1
2667 Female, age 75, unknown 4604.0
1816 Male, age 51, unknown 4552.0
1944 Female, age 72, unknown 4545.5
2007 Male, age 72, unknown 4530.9
2316 Male, age 76, right hemisphere 4495.1
1815 Male, age 53, unknown 4479.8
2224 Female, age 72, unknown 4414.8
2273 Male, age 74, both hemispheres 4410.6
2825 Male, age 18, unknown 4360.0
2407 Male, age 75, both hemispheres 4263.1
Red nucleus
nTPM: 4500.0
2503 Female, age 72, unknown 4698.0
1821 Female, age 72, unknown 4653.3
1954 Female, age 42, unknown 4563.6
2823 Male, age 76, right hemisphere 4547.0
2227 Male, age 72, unknown 4544.2
2769 Male, age 72, unknown 4511.5
1904 Male, age 53, unknown 4494.1
2588 Male, age 74, left hemisphere 4475.5
1865 Male, age 51, unknown 4465.2
2785 Male, age 18, unknown 4446.0
2725 Female, age 75, unknown 4409.4
2584 Male, age 75, left hemisphere 4192.4
Substantia nigra
nTPM: 4474.7
1916 Female, age 42, unknown 4648.2
1851 Male, age 51, unknown 4605.7
2699 Male, age 18, unknown 4543.8
1889 Female, age 72, unknown 4503.3
2241 Male, age 72, unknown 4487.2
2409 Female, age 72, unknown 4420.2
2665 Male, age 74, both hemispheres 4404.6
2590 Female, age 75, unknown 4387.1
1941 Male, age 53, unknown 4380.2
2583 Male, age 75, right hemisphere 4366.4
Superior colliculus
nTPM: 4431.3
2087 Female, age 72, unknown 4554.4
1796 Male, age 53, unknown 4509.4
2668 Female, age 75, unknown 4506.3
1995 Male, age 72, unknown 4448.9
2261 Male, age 18, unknown 4427.3
2664 Male, age 75, both hemispheres 4418.2
1913 Female, age 42, unknown 4413.6
1895 Male, age 76, right hemisphere 4366.4
1839 Male, age 51, unknown 4339.8
2587 Male, age 74, left hemisphere 4328.7
Ventral tegmental area
nTPM: 4423.4
1915 Female, age 42, unknown 4521.0
2410 Female, age 72, unknown 4487.1
2223 Female, age 72, unknown 4430.6
1942 Male, age 51, unknown 4392.4
2218 Male, age 76, both hemispheres 4371.0
2021 Male, age 53, unknown 4338.3

MIDBRAIN - GTEx RNA-seqi
Average nTPM 3602.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 3602.6
Samples: 139

Max nTPM: 14589.1
Min nTPM: 1024.6
Std nTPM: 1822.1
Median nTPM: 3268.4
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 14589.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 9776.9
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 8579.2
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 7434.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 7307.5
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 7159.8
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 6771.4
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 6702.6
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 6698.4
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 6679.5
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 6357.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 795.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 795.8
FF:10158-103A5 76 years, female 795.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 1915.6
Pig sample Sample description nTPM
Midbrain
nTPM: 1915.6
Samples: 4

Max nTPM: 2529.5
Min nTPM: 1293.7
Sample A Female 2529.5
Sample B Female 1835.8
Sample C Male 2003.4
Sample D Male 1293.7
Periaqueductal gray
nTPM: 1604.5
Samples: 3

Max nTPM: 1756.3
Min nTPM: 1374.0
Sample B Female 1683.2
Sample C Male 1756.3
Sample D Male 1374.0
Substantia nigra
nTPM: 1636.8
Samples: 4

Max nTPM: 2300.2
Min nTPM: 1345.7
Sample A Female 2300.2
Sample B Female 1378.8
Sample C Male 1522.4
Sample D Male 1345.7
Superior colliculi
nTPM: 1719.4
Samples: 4

Max nTPM: 2401.8
Min nTPM: 783.8
Sample A Female 2401.8
Sample B Female 783.8
Sample C Male 2053.6
Sample D Male 1638.5

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.