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BRAIN RETINA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
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Brain proteome
Eye
Retina
RETINA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:269.1 nTPM
GTEx:269.1 nTPM
FANTOM5:119.7 Scaled Tags Per Million
Pig:80.5 nTPM
Mouse:246.7 nTPM

RETINA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 269.1
GTEx sample id Sample description nTPM
Retina
Average nTPM: 269.1
Samples: 105

Max nTPM: 426.3
Min nTPM: 110.3
Std nTPM: 76.7
Median nTPM:
163_1 78 years, male 426.3
352_1 62 years, male 422.6
425_1 59 years, female 411.5
319_1 81 years, male 399.5
246_1 77 years, male 396.8
177_1 74 years, male 395.5
172_1 72 years, female 393.2
237_1 82 years, male 392.7
386_1 76 years, male 381.4
229_1 69 years, female 376.6
389_1 86 years, female 369.3
526_1 61 years, male 361.0
375_1 74 years, female 353.8
379_1 60 years, male 352.8
404_1 82 years, female 352.7
480_1 63 years, male 350.9
6_1 73 years, female 350.6
356_1 87 years, female 348.3
217_1 76 years, male 345.6
355_1 70 years, female 344.9
243_1 75 years, male 342.9
405_1 91 years, male 342.4
189_1 76 years, male 341.4
354_1 81 years, female 340.9
394_1 75 years, female 338.4
377_1 82 years, female 336.3
350_1 84 years, female 335.9
353_1 82 years, female 335.3
347_1 72 years, male 335.2
468_1 89 years, male 333.4
349_1 83 years, male 326.1
335_1 73 years, female 324.4
316_1 62 years, male 324.3
376_1 75 years, female 321.1
324_1 76 years, male 319.9
265_1 87 years, male 312.7
447_1 81 years, male 311.0
286_1 68 years, female 305.6
292_1 71 years, male 305.6
503_1 68 years, male 298.0
126_1 63 years, male 291.6
9_1 66 years, female 287.5
406_1 79 years, male 282.9
291_1 76 years, male 280.7
318_1 68 years, male 280.7
115_1 83 years, male 278.1
251_1 78 years, male 276.0
518_1 75 years, female 274.6
254_1 77 years, female 272.9
321_1 62 years, female 272.9
415_1 77 years, female 272.1
384_1 83 years, male 268.9
348_1 84 years, male 265.2
266_1 85 years, male 264.5
517_1 88 years, male 262.5
218_1 71 years, female 260.5
414_1 84 years, female 257.6
293_1 68 years, female 253.7
32_1 67 years, male 252.5
173_1 67 years, male 251.6
351_1 91 years, male 249.6
99_1 64 years, male 248.6
320_1 89 years, female 243.6
499_1 55 years, female 238.1
452_1 88 years, female 237.7
264_1 73 years, female 230.3
466_1 57 years, female 229.7
506_1 65 years, male 229.3
35_1 74 years, female 226.3
396_1 62 years, male 225.5
153_1 70 years, female 223.7
137_1 83 years, male 222.9
43_1 64 years, female 222.5
81_1 67 years, male 220.5
117_1 61 years, male 220.4
295_1 61 years, female 217.3
17_1 71 years, male 215.3
317_1 60 years, male 212.3
42_1 85 years, male 209.4
18_1 88 years, male 209.0
314_1 67 years, male 208.4
162_1 79 years, female 206.1
120_1 70 years, female 202.0
311_1 78 years, male 196.9
4_1 88 years, female 196.0
145_1 84 years, male 192.9
315_1 62 years, female 190.4
322_1 76 years, male 190.2
142_1 61 years, female 187.3
313_1 79 years, female 186.7
109_1 81 years, female 184.2
413_1 59 years, female 183.5
288_1 66 years, female 181.1
307_1 66 years, female 179.3
490_1 67 years, female 173.0
2_1 77 years, female 171.9
149_1 88 years, male 166.8
119_1 70 years, female 158.0
41_1 94 years, female 147.1
89_1 63 years, male 143.1
495_1 57 years, female 132.9
139_1 64 years, female 128.8
501_1 88 years, male 127.2
491_1 89 years, female 114.2
308_1 70 years, female 110.3
Show allShow less

RETINA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 119.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Retina
Scaled Tags Per Million: 119.7
FF:10030-101E3 24-65 years, mixed 119.7

RETINA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 80.5
Pig sample Sample description nTPM
Retina
nTPM: 80.5
Samples: 4

Max nTPM: 86.1
Min nTPM: 76.0
Sample A Female 80.5
Sample B Female 86.1
Sample C Male 79.4
Sample D Male 76.0

RETINA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 246.7
Mouse sample Sample description nTPM
Retina
nTPM: 246.7
Samples: 4

Max nTPM: 268.8
Min nTPM: 216.4
Sample A Male 268.8
Sample B Male 251.2
Sample C Female 216.4
Sample D Female 250.5

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by the Knut & Alice Wallenberg Foundation.