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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:90.4 nTPM
HPA:90.4 nTPM
GTEx:91.6 nTPM
FANTOM5:232.4 Scaled Tags Per Million
Pig:33.4 nTPM
Mouse:113.8 nTPM
Allen mouse:7.9 Expression energy

AMYGDALA - Annotated protein expression
Pending normal tissue analysis

AMYGDALA - HPA Brain RNA-seq
Max nTPM 90.4
Sample id Sample description nTPM
Amygdala
nTPM: 78.0
2695 Female, age 67, right hemisphere 90.4
2814 Male, age 76, right hemisphere 77.7
2514 Male, age 75, right hemisphere 77.0
2517 Female, age 94, left hemisphere 76.1
1987 Female, age 91, left hemisphere 68.9
Basal amygdala
nTPM: 86.6
2827 Female, age 67, right hemisphere 100.2
2609 Male, age 75, right hemisphere 96.6
2685 Female, age 94, left hemisphere 87.5
2243 Female, age 91, right hemisphere 82.5
1955 Male, age 76, both hemispheres 78.5
2110 Male, age 80, left hemisphere 74.0
Central amygdala
nTPM: 84.6
2826 Female, age 94, left hemisphere 110.3
2515 Male, age 75, right hemisphere 82.2
2701 Female, age 91, right hemisphere 77.9
1905 Male, age 76, both hemispheres 76.6
2239 Male, age 80, left hemisphere 76.0
Corticomedial amygdala
nTPM: 76.9
2535 Female, age 67, right hemisphere 85.6
2428 Male, age 75, right hemisphere 81.7
2240 Male, age 76, both hemispheres 80.5
2429 Female, age 94, left hemisphere 75.9
2829 Male, age 80, left hemisphere 73.6
2242 Female, age 91, right hemisphere 64.2
Lateral amygdala
nTPM: 90.4
2830 Female, age 67, right hemisphere 102.1
2534 Female, age 94, left hemisphere 100.4
2516 Male, age 75, right hemisphere 95.2
2256 Male, age 80, left hemisphere 87.5
2255 Female, age 91, right hemisphere 80.3
1883 Male, age 76, both hemispheres 76.7
Stria terminalis, bed nucleus
nTPM: 67.8
1974 Female, age 91, both hemispheres 70.2
2201 Male, age 74, unknown 67.0
2486 Female, age 94, both hemispheres 66.2

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 91.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 91.6
Samples: 152

Max nTPM: 178.5
Min nTPM: 4.8
Std nTPM: 26.8
Median nTPM: 90.0
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 178.5
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 177.8
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 156.6
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 153.3
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 148.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 145.1
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 143.6
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 142.8
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 140.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 139.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 135.8
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 135.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 134.8
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 131.7
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 131.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 128.7
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 128.4
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 127.3
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 125.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 124.9
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 124.2
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 123.0
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 119.9
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 117.1
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 114.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 113.9
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 113.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 112.4
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 111.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 111.6
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 111.5
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 110.6
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 110.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 106.7
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 105.7
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 105.2
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 105.2
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 104.9
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 104.8
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 104.0
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 103.8
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 103.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 102.6
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 101.9
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 101.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 101.1
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 100.0
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 99.2
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 98.1
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 97.8
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 97.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 97.4
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 96.8
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 96.4
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 96.4
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 96.3
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 95.7
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 95.6
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 95.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 94.3
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 94.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 94.2
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 94.0
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 94.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 94.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 93.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 93.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 92.8
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 92.5
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 92.4
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 92.3
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 92.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 91.5
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 91.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 90.9
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 90.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 89.8
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 89.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 88.4
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 87.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 87.5
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 87.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 86.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 86.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 85.0
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 84.3
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 84.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 83.6
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 83.0
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 82.8
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 82.8
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 82.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 82.2
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 82.1
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 82.0
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 82.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 81.6
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 81.3
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 81.2
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 80.1
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 79.3
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 78.8
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 78.1
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 76.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 75.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 75.2
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 75.1
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 73.8
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 73.7
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 72.8
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 71.9
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 71.9
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 71.8
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 71.6
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 71.3
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 71.3
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 71.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 71.1
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 70.7
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 70.6
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 69.5
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 69.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 69.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 69.4
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 69.0
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 68.6
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 68.6
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 68.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 68.3
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 68.2
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 67.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 65.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 65.8
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 65.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 65.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 65.2
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 64.8
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 62.1
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 61.2
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 61.0
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 60.7
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 60.5
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 58.0
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 56.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 55.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 53.1
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 51.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 50.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 48.4
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 46.8
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 38.1
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 4.8
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 232.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 232.4
FF:10151-102I7 76 years, female 232.4

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 33.4
Pig sample Sample description nTPM
Amygdala
nTPM: 33.4
Samples: 4

Max nTPM: 40.1
Min nTPM: 27.7
Sample A Female 40.1
Sample B Female 30.5
Sample C Male 35.3
Sample D Male 27.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 113.8
Mouse sample Sample description nTPM
Amygdala
nTPM: 113.8
Samples: 4

Max nTPM: 129.7
Min nTPM: 100.3
Sample A Male 100.3
Sample B Male 112.7
Sample C Female 129.7
Sample D Female 112.5

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 7.9
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 7.9
69837922 Antisense, RP_050224_01_B10, Mouse strain C57BL/6J (56 days, male) 7.9

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