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BRAIN SPINAL CORD Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
Brain proteome
SPINAL CORD - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:74.7 nTPM
HPA:74.7 nTPM
GTEx:64.4 nTPM
FANTOM5:210.8 Scaled Tags Per Million
Pig:19.8 nTPM

SPINAL CORD - Annotated protein expression
Pending normal tissue analysis

SPINAL CORD - HPA Brain RNA-seq
Max nTPM 74.7
Sample id Sample description nTPM
Cervical spinal cord, central gray
nTPM: 70.1
2194 Female, age 79, both hemispheres 74.0
2048 Male, age 55, midline 73.4
2565 Male, age 75, midline 70.4
1981 Female, age 72, midline 67.2
2816 Male, age 47, midline 65.4
Cervical spinal cord, dorsal horn
nTPM: 69.1
2296 Male, age 66, both hemispheres 72.1
1877 Male, age 55, unknown 71.0
2173 Female, age 72, unknown 70.8
2069 Male, age 47, both hemispheres 68.5
2721 Male, age 90, both hemispheres 67.3
2297 Male, age 75, both hemispheres 64.6
Cervical spinal cord, ventral horn
nTPM: 74.7
2068 Male, age 55, unknown 78.7
2809 Male, age 90, both hemispheres 78.3
2295 Male, age 66, both hemispheres 78.1
2480 Male, age 75, both hemispheres 77.8
2820 Female, age 79, both hemispheres 73.4
2098 Female, age 72, unknown 62.0

SPINAL CORD - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 64.4
GTEx sample id Sample description nTPM
Brain - Spinal cord (cervical c-1)
Average nTPM: 64.4
Samples: 159

Max nTPM: 187.9
Min nTPM: 22.4
Std nTPM: 21.5
Median nTPM: 60.5
GTEX-1HGF4-0011-R9a-SM-ADEH9 60-69 years, male 187.9
GTEX-1GN2E-0011-R9b-SM-9WG7F 60-69 years, male 126.0
GTEX-1OJC4-0011-R9a-SM-EZ6N1 50-59 years, female 117.9
GTEX-RU72-0011-R9A-SM-2TF67 50-59 years, female 116.4
GTEX-148VJ-0011-R9b-SM-5SI77 70-79 years, male 108.5
GTEX-1I1GV-0011-R9b-SM-ARZLE 60-69 years, male 106.9
GTEX-13O1R-0011-R9b-SM-5KM33 60-69 years, male 105.9
GTEX-1IGQW-0011-R9b-SM-D4P25 60-69 years, male 102.1
GTEX-13NYB-0011-R9b-SM-5MR5P 40-49 years, male 100.1
GTEX-1CAV2-0011-R9b-SM-9WG5M 40-49 years, female 97.5
GTEX-11WQK-0011-R9b-SM-5BC6N 50-59 years, male 97.1
GTEX-1H1DF-0011-R9b-SM-CM2RN 40-49 years, female 96.5
GTEX-14E6C-0011-R9a-SM-6EU33 40-49 years, male 96.1
GTEX-1H1DG-0011-R9b-SM-ACKVB 70-79 years, male 93.4
GTEX-11ZVC-0011-R9a-SM-57WC5 50-59 years, female 92.5
GTEX-1GF9W-0011-R9b-SM-9WG7J 60-69 years, male 92.2
GTEX-11EMC-0011-R9b-SM-DO921 60-69 years, female 90.2
GTEX-1KANB-0011-R9b-SM-EZ6MO 50-59 years, male 90.2
GTEX-T6MN-0011-R9A-SM-32QOZ 50-59 years, male 88.2
GTEX-1H3NZ-0011-R9a-SM-ADEH7 60-69 years, male 88.0
GTEX-1C6VS-0011-R9b-SM-9WG5W 60-69 years, male 87.1
GTEX-1J8EW-0011-R9b-SM-D4P2F 60-69 years, female 85.3
GTEX-WL46-0011-R9A-SM-3MJFP 50-59 years, male 85.0
GTEX-1CB4H-0011-R9a-SM-CKZNL 60-69 years, female 83.8
GTEX-Q2AG-0011-R9A-SM-2HMJ6 40-49 years, female 83.5
GTEX-XLM4-0011-R9A-SM-4AT45 60-69 years, male 83.5
GTEX-1F52S-0011-R9a-SM-9WG62 60-69 years, female 83.5
GTEX-1HBPM-0011-R9b-SM-ARL7C 60-69 years, female 82.7
GTEX-1I19N-0011-R9a-SM-CMKHN 70-79 years, male 82.5
GTEX-ZF28-0011-R9a-SM-4WWDY 60-69 years, male 82.3
GTEX-1H23P-0011-R9a-SM-CM2T1 60-69 years, male 82.2
GTEX-13X6I-0011-R9b-SM-5PNZJ 60-69 years, male 82.1
GTEX-1JMLX-0011-R9a-SM-EYYXM 50-59 years, male 80.4
GTEX-1CAMQ-0011-R9a-SM-9WG5Z 40-49 years, male 79.6
GTEX-13FTY-0011-R9b-SM-5KM2U 40-49 years, female 77.6
GTEX-1HR98-0011-R9b-SM-ARL79 60-69 years, male 77.3
GTEX-1GZ2Q-0011-R9a-SM-9WG7A 40-49 years, male 76.9
GTEX-11ZUS-0011-R9b-SM-5BC76 30-39 years, male 76.7
GTEX-YJ89-0011-R9a-SM-4SOK7 60-69 years, male 76.4
GTEX-1BAJH-0011-R9b-SM-7EPIQ 70-79 years, male 75.8
GTEX-13PL6-0011-R9b-SM-5O9CH 40-49 years, female 75.7
GTEX-1I1GS-0011-R9b-SM-CMKHF 60-69 years, male 75.6
GTEX-13QJC-0011-R9b-SM-5PNX3 60-69 years, female 74.3
GTEX-16NPV-0011-R9b-SM-79ONF 50-59 years, female 74.0
GTEX-1LB8K-0011-R9a-SM-EZ6MP 50-59 years, male 74.0
GTEX-1GTWX-0011-R9a-SM-ADEH4 60-69 years, male 73.0
GTEX-14BIM-0011-R9a-SM-6LLJL 60-69 years, female 72.7
GTEX-TSE9-0011-R9A-SM-3DB7Q 60-69 years, female 71.7
GTEX-11ZTS-0011-R9b-SM-DO93Q 60-69 years, female 70.6
GTEX-1A32A-0011-R9b-SM-7MGXD 50-59 years, female 70.1
GTEX-13PLJ-0011-R9b-SM-5O9DV 60-69 years, female 70.0
GTEX-13N1W-0011-R9b-SM-5MR4R 70-79 years, male 69.9
GTEX-14E7W-0011-R9a-SM-62LE6 70-79 years, male 69.7
GTEX-1EKGG-0011-R9a-SM-CMKFV 60-69 years, male 69.7
GTEX-13CZV-0011-R9a-SM-5LZXT 60-69 years, male 69.3
GTEX-13PVQ-0011-R9b-SM-5LU3B 50-59 years, male 68.8
GTEX-1GZ4I-0011-R9b-SM-B2LY8 50-59 years, male 68.3
GTEX-1EWIQ-0011-R9a-SM-ARL8L 70-79 years, female 68.2
GTEX-1I1CD-0011-R9a-SM-CMKHB 60-69 years, female 68.1
GTEX-1GN1U-0011-R9b-SM-CMKFW 50-59 years, female 67.9
GTEX-139UW-0011-R9b-SM-5LZYT 60-69 years, male 67.7
GTEX-1LSNL-0011-R9b-SM-EYYWK 50-59 years, male 67.5
GTEX-12WSC-0011-R9a-SM-5GU4U 50-59 years, male 66.9
GTEX-1F88F-0011-R9b-SM-9WG7L 60-69 years, female 66.6
GTEX-13SLW-0011-R9a-SM-5O9BT 70-79 years, male 66.3
GTEX-13OVL-0011-R9a-SM-5P9GX 50-59 years, male 65.9
GTEX-1C6VQ-0011-R9a-SM-7SB85 50-59 years, male 64.8
GTEX-11UD2-0011-R9b-SM-DO926 50-59 years, male 64.4
GTEX-14BIN-0011-R9a-SM-5SI76 50-59 years, female 63.9
GTEX-1B8L1-0011-R9b-SM-9WG5U 60-69 years, male 63.9
GTEX-11GSP-0011-R9b-SM-5NQ77 60-69 years, female 63.7
GTEX-11ONC-0011-R9b-SM-5NQ8J 60-69 years, male 63.7
GTEX-1HBPI-0011-R9b-SM-ARL76 50-59 years, male 63.4
GTEX-1JJ6O-0011-R9a-SM-EYYXP 60-69 years, male 62.7
GTEX-1EH9U-0011-R9b-SM-9WG5T 60-69 years, male 62.3
GTEX-1EU9M-0011-R9a-SM-9WG61 60-69 years, male 61.4
GTEX-13NZA-0011-R9b-SM-5MR5I 60-69 years, male 61.3
GTEX-1J8JJ-0011-R9a-SM-ACKVF 60-69 years, female 61.0
GTEX-1HBPH-0011-R9a-SM-CMKH3 40-49 years, female 60.7
GTEX-13S7M-0011-R9a-SM-5O9DW 60-69 years, female 60.5
GTEX-145LU-0011-R9b-SM-5SI66 50-59 years, male 60.4
GTEX-1LVA9-0011-R9a-SM-EYYWF 50-59 years, male 60.3
GTEX-NL4W-0011-R9a-SM-2I3G1 50-59 years, male 60.1
GTEX-17EVQ-0011-R9b-SM-79OJY 70-79 years, male 59.7
GTEX-14PJO-0011-R9b-SM-62LE9 60-69 years, male 59.6
GTEX-131XW-0011-R9a-SM-5N9EO 50-59 years, female 59.2
GTEX-1RQEC-0011-R9a-SM-EZ6N3 60-69 years, male 59.1
GTEX-1J1OQ-0011-R9b-SM-ARZMK 40-49 years, female 58.8
GTEX-139T4-0011-R9b-SM-5HL6S 50-59 years, female 57.5
GTEX-13RTJ-0011-R9a-SM-5Q5AY 60-69 years, male 57.3
GTEX-1H3O1-0011-R9b-SM-CM2SQ 60-69 years, male 57.1
GTEX-1LVAO-0011-R9a-SM-EZ6MY 60-69 years, male 56.9
GTEX-1IY9M-0011-R9b-SM-D3L8J 60-69 years, male 56.2
GTEX-ZE9C-0011-R9a-SM-4WWCY 60-69 years, male 56.0
GTEX-13SLX-0011-R9b-SM-5SI6X 50-59 years, female 55.9
GTEX-XMD1-0011-R9A-SM-4AT49 60-69 years, male 55.9
GTEX-16Z82-0011-R9a-SM-7DUFA 60-69 years, male 55.5
GTEX-12WSD-0011-R9a-SM-5GU6W 60-69 years, female 55.4
GTEX-147GR-0011-R9a-SM-5S2UY 60-69 years, male 55.4
GTEX-1192X-0011-R9b-SM-DO934 50-59 years, male 55.4
GTEX-12126-0011-R9b-SM-5BC6P 20-29 years, male 55.1
GTEX-QVUS-0011-R9A-SM-3GIJA 60-69 years, female 54.9
GTEX-1IDJH-0011-R9a-SM-ADEIN 70-79 years, male 54.8
GTEX-13FLV-0011-R9b-SM-5L3DA 50-59 years, male 54.4
GTEX-1GF9V-0011-R9a-SM-CL53K 60-69 years, male 53.5
GTEX-1GZHY-0011-R9a-SM-9WG5R 50-59 years, female 53.5
GTEX-16XZZ-0011-R9b-SM-7DHKX 60-69 years, male 53.3
GTEX-131YS-0011-R9b-SM-5EQLY 60-69 years, female 53.2
GTEX-13JUV-0011-R9a-SM-5LZX3 40-49 years, female 52.8
GTEX-1HSMO-0011-R9b-SM-CM2T2 60-69 years, male 52.4
GTEX-1R46S-0011-R9a-SM-EZ6N7 60-69 years, female 52.3
GTEX-12WSH-0011-R9b-SM-5LZUG 50-59 years, male 51.3
GTEX-1ICLZ-0011-R9a-SM-ARL7E 60-69 years, male 51.0
GTEX-1H1ZS-0011-R9a-SM-CM2SO 70-79 years, male 50.7
GTEX-14PN4-0011-R9a-SM-6LLH9 50-59 years, male 49.7
GTEX-OHPN-0011-R9A-SM-5TDEJ 60-69 years, female 49.5
GTEX-1HFI6-0011-R9b-SM-CMKH4 40-49 years, male 48.8
GTEX-14BIL-0011-R9a-SM-5SI7A 50-59 years, male 48.4
GTEX-NPJ7-0011-R9a-SM-2TC5R 60-69 years, female 48.0
GTEX-QDT8-0011-R9A-SM-CYPRD 30-39 years, female 47.8
GTEX-13CIG-0011-R9a-SM-5K7VU 50-59 years, male 47.7
GTEX-ZVZQ-0011-R9a-SM-51MRH 60-69 years, female 47.7
GTEX-18464-0011-R9a-SM-731BK 50-59 years, male 47.5
GTEX-15G19-0011-R9b-SM-7KUEE 60-69 years, male 47.2
GTEX-1F6I4-0011-R9a-SM-CMKFU 60-69 years, male 47.0
GTEX-13FXS-0011-R9a-SM-5K7UI 50-59 years, male 46.6
GTEX-14ABY-0011-R9a-SM-5PNZK 50-59 years, male 46.5
GTEX-1H2FU-0011-R9b-SM-CE6S4 60-69 years, female 46.4
GTEX-1MJK2-0011-R9b-SM-EZ6MZ 50-59 years, male 46.3
GTEX-PWO3-0011-R9A-SM-EVR2V 60-69 years, female 46.3
GTEX-11DZ1-0011-R9a-SM-DO933 50-59 years, male 46.2
GTEX-1JN1M-0011-R9a-SM-EZ6MR 60-69 years, female 46.2
GTEX-14PJM-0011-R9b-SM-6EU35 50-59 years, female 46.1
GTEX-13N2G-0011-R9b-SM-5MR4E 60-69 years, male 45.7
GTEX-1B933-0011-R9a-SM-79OOR 50-59 years, female 45.4
GTEX-1I1HK-0011-R9a-SM-CMKHK 60-69 years, male 45.0
GTEX-14BMV-0011-R9b-SM-5ZZUA 50-59 years, male 44.8
GTEX-15ER7-0011-R9b-SM-6PALF 20-29 years, female 44.5
GTEX-T5JC-0011-R9A-SM-32PLV 20-29 years, male 44.2
GTEX-13NYS-0011-R9b-SM-5MR44 60-69 years, male 43.7
GTEX-13VXU-0011-R9b-SM-5SI73 50-59 years, male 43.6
GTEX-OXRO-0011-R9A-SM-3NB1X 60-69 years, female 43.6
GTEX-13OVJ-0011-R9b-SM-5L3GD 50-59 years, female 42.9
GTEX-15DYW-0011-R9b-SM-6PALB 60-69 years, female 42.7
GTEX-1GN73-0011-R9a-SM-CKZO5 60-69 years, male 41.7
GTEX-1A8G7-0011-R9b-SM-7IGQH 60-69 years, male 41.4
GTEX-R55E-0011-R9A-SM-2TC6C 20-29 years, male 41.0
GTEX-YFC4-0011-R9a-SM-4SOK4 40-49 years, female 41.0
GTEX-14JIY-0011-R9a-SM-6EU34 60-69 years, male 40.1
GTEX-ZAB4-0011-R9a-SM-4SOKG 40-49 years, male 38.2
GTEX-1IKJJ-0011-R9a-SM-ARZLI 60-69 years, male 37.7
GTEX-15DCD-0011-R9b-SM-7KUED 70-79 years, female 37.3
GTEX-15DDE-0011-R9b-SM-6M46U 50-59 years, female 37.3
GTEX-15EO6-0011-R9a-SM-6PALG 50-59 years, male 36.6
GTEX-NPJ8-0011-R9a-SM-2YUN5 40-49 years, male 35.0
GTEX-QVJO-0011-R9A-SM-2S1QH 60-69 years, female 33.6
GTEX-RNOR-0011-R9A-SM-2TF52 50-59 years, female 32.8
GTEX-15CHQ-0011-R9a-SM-6LLHX 60-69 years, male 26.2
GTEX-13OW5-0011-R9b-SM-5O9CL 60-69 years, male 22.4
Show allShow less

SPINAL CORD - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 210.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Spinal cord
Scaled Tags Per Million: 210.8
FF:10181-103D1 60 years, female 279.9
FF:10159-103A6 76 years, female 141.8

SPINAL CORD - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 19.8
Pig sample Sample description nTPM
Dorsal spinal cord
nTPM: 16.4
Samples: 4

Max nTPM: 21.6
Min nTPM: 8.7
Sample A Female 19.2
Sample B Female 16.0
Sample C Male 8.7
Sample D Male 21.6
Ventral spinal cord
nTPM: 19.9
Samples: 4

Max nTPM: 21.1
Min nTPM: 18.6
Sample A Female 21.1
Sample B Female 20.6
Sample C Male 18.6
Sample D Male 19.1

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