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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:88.4 nTPM
HPA:49.6 nTPM
GTEx:88.4 nTPM
FANTOM5:95.8 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA034739
Glandular cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 49.6
overview
Male, age 65
Small intestine sample 232
nTPM: 50.5
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 50.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 55.9
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 41.1

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 88.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 88.4
Samples: 187

Max nTPM: 121.5
Min nTPM: 47.8
Std nTPM: 11.6
Median nTPM: 88.0
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 121.5
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 121.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 116.2
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 114.3
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 113.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 107.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 107.6
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 107.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 107.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 107.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 107.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 106.7
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 106.3
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 105.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 105.9
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 104.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 104.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 103.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 103.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 102.8
GTEX-183FY-1626-SM-793D8 20-29 years, male 102.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 101.9
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 101.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 101.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 101.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 101.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 100.8
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 99.9
GTEX-1122O-1326-SM-5H11F 60-69 years, female 99.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 98.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 98.5
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 98.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 98.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 98.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 98.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 97.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 97.8
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 97.5
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 97.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 97.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 97.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 96.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 96.1
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 96.1
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 95.9
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 95.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 95.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 95.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 95.2
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 95.0
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 94.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 94.4
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 94.2
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 94.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 93.7
GTEX-14PN3-2026-SM-68729 60-69 years, female 93.5
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 93.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 93.3
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 93.1
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 93.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 92.9
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 92.8
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 92.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 92.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 92.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 92.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 92.3
GTEX-13O61-1326-SM-5KM31 60-69 years, male 92.3
GTEX-14PK6-1626-SM-6871I 70-79 years, female 91.8
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 91.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 91.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 91.4
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 90.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 90.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 90.7
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 90.7
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 90.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 90.4
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 90.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 90.2
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 90.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 90.1
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 90.1
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 89.9
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 89.9
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 89.6
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 89.4
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 89.4
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 88.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 88.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 88.5
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 88.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 88.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 88.0
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 87.9
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 87.6
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 87.5
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 87.4
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 87.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 87.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 87.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 87.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 87.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 86.9
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 86.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 86.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 86.8
GTEX-117YX-0326-SM-5GICL 50-59 years, male 86.7
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 86.7
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 86.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 86.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 86.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 86.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 86.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 86.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 86.0
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 85.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 85.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 85.2
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 85.2
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 85.0
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 84.7
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 84.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 84.4
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 84.4
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 84.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 83.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 83.8
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 83.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 83.5
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 83.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 83.1
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 82.9
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 82.3
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 82.2
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 82.2
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 81.8
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 81.7
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 81.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 81.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 81.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 81.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 80.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 80.9
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 80.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 80.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 80.3
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 79.9
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 79.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 79.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 78.9
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 78.8
GTEX-1192X-2526-SM-59868 50-59 years, male 78.6
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 78.5
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 78.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 78.2
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 77.8
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 76.9
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 76.7
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 76.5
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 76.4
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 76.2
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 76.0
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 75.8
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 75.6
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 75.5
GTEX-13111-1426-SM-5DUW3 50-59 years, male 75.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 74.7
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 74.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 74.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 73.9
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 73.5
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 73.5
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 73.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 73.1
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 72.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 72.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 70.4
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 68.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 67.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 67.5
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 64.3
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 62.3
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 61.5
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 59.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 55.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 47.8
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 95.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 95.8
FF:10024-101D6 15,40,85 years, mixed 95.8

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The Human Protein Atlas project is funded
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