MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:80.3 nTPM
HPA:80.3 nTPM
GTEx:90.8 nTPM
FANTOM5:143.2 Scaled Tags Per Million
Pig:141.6 nTPM
Mouse:126.4 nTPM
Allen mouse:10.0 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 80.3
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 64.1
2586 Male, age 75, left hemisphere 98.8
2666 Male, age 74, left hemisphere 78.6
2219 Male, age 76, both hemispheres 67.9
1870 Female, age 42, unknown 63.8
1833 Male, age 53, unknown 62.7
1830 Male, age 51, unknown 57.5
1827 Male, age 72, unknown 56.6
2828 Female, age 72, unknown 56.4
2411 Female, age 72, unknown 53.4
2019 Male, age 18, unknown 45.7
Dorsal raphe nucleus
nTPM: 71.8
2047 Male, age 72, unknown 102.8
1828 Male, age 53, unknown 81.7
2750 Male, age 76, both hemispheres 61.4
2016 Female, age 72, unknown 56.8
2298 Female, age 72, unknown 56.2
Inferior colliculus
nTPM: 70.9
2849 Male, age 72, unknown 85.0
1848 Female, age 42, unknown 79.4
1890 Male, age 53, unknown 64.4
2097 Female, age 72, unknown 55.0
Median raphe nucleus
nTPM: 74.8
2220 Male, age 76, midline 74.8
Pedunculopontine tegmental nucleus
nTPM: 54.0
1921 Female, age 85, both hemispheres 66.4
2334 Male, age 80, both hemispheres 63.3
2338 Male, age 61, both hemispheres 32.5
Periaquaductal grey, anterior
nTPM: 72.3
1947 Male, age 18, unknown 85.7
2502 Female, age 75, unknown 69.6
1795 Male, age 51, unknown 61.7
Periaquaductal grey, dorsal
nTPM: 49.0
1840 Male, age 53, unknown 67.8
1831 Male, age 72, unknown 45.1
2464 Female, age 72, unknown 42.0
2850 Male, age 76, both hemispheres 41.2
Periaquaductal grey, lateral
nTPM: 39.6
2053 Male, age 18, unknown 47.3
2140 Male, age 76, both hemispheres 40.3
2272 Male, age 74, both hemispheres 31.2
Pretectal area
nTPM: 43.1
2825 Male, age 18, unknown 69.2
2667 Female, age 75, unknown 60.7
2224 Female, age 72, unknown 55.9
2407 Male, age 75, both hemispheres 53.5
2316 Male, age 76, right hemisphere 48.3
2007 Male, age 72, unknown 39.4
1817 Female, age 42, unknown 33.1
1944 Female, age 72, unknown 31.3
1816 Male, age 51, unknown 30.4
1815 Male, age 53, unknown 28.5
2273 Male, age 74, both hemispheres 23.5
Red nucleus
nTPM: 63.3
2584 Male, age 75, left hemisphere 78.3
2769 Male, age 72, unknown 75.9
2823 Male, age 76, right hemisphere 72.5
2227 Male, age 72, unknown 71.0
1821 Female, age 72, unknown 67.0
2588 Male, age 74, left hemisphere 64.4
2725 Female, age 75, unknown 62.4
1954 Female, age 42, unknown 60.0
2503 Female, age 72, unknown 57.1
1904 Male, age 53, unknown 56.6
1865 Male, age 51, unknown 55.7
2785 Male, age 18, unknown 38.0
Substantia nigra
nTPM: 80.3
1916 Female, age 42, unknown 125.7
2665 Male, age 74, both hemispheres 93.3
2699 Male, age 18, unknown 90.5
1851 Male, age 51, unknown 86.5
1941 Male, age 53, unknown 85.2
2583 Male, age 75, right hemisphere 80.0
2241 Male, age 72, unknown 70.2
2409 Female, age 72, unknown 61.6
2590 Female, age 75, unknown 55.3
1889 Female, age 72, unknown 54.5
Superior colliculus
nTPM: 46.2
1895 Male, age 76, right hemisphere 76.3
1839 Male, age 51, unknown 71.3
2664 Male, age 75, both hemispheres 67.5
1796 Male, age 53, unknown 54.8
2668 Female, age 75, unknown 47.9
2587 Male, age 74, left hemisphere 45.3
2261 Male, age 18, unknown 33.2
2087 Female, age 72, unknown 27.5
1913 Female, age 42, unknown 21.5
1995 Male, age 72, unknown 16.7
Ventral tegmental area
nTPM: 76.7
1915 Female, age 42, unknown 97.0
1942 Male, age 51, unknown 79.8
2218 Male, age 76, both hemispheres 78.0
2410 Female, age 72, unknown 77.3
2223 Female, age 72, unknown 70.2
2021 Male, age 53, unknown 58.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 90.8
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 90.8
Samples: 139

Max nTPM: 208.7
Min nTPM: 33.6
Std nTPM: 34.7
Median nTPM: 83.5
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 208.7
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 199.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 183.8
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 181.1
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 153.4
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 152.8
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 152.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 152.1
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 151.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 148.2
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 147.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 143.2
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 143.2
FF:10158-103A5 76 years, female 143.2

MIDBRAIN - Pig RNA-seqi
Average nTPM 141.6
Pig sample Sample description nTPM
Midbrain
nTPM: 129.0
Samples: 4

Max nTPM: 167.0
Min nTPM: 95.6
Sample A Female 95.6
Sample B Female 114.7
Sample C Male 167.0
Sample D Male 138.8
Periaqueductal gray
nTPM: 97.5
Samples: 3

Max nTPM: 107.3
Min nTPM: 83.0
Sample B Female 102.1
Sample C Male 107.3
Sample D Male 83.0
Substantia nigra
nTPM: 130.7
Samples: 4

Max nTPM: 175.9
Min nTPM: 89.5
Sample A Female 165.3
Sample B Female 89.5
Sample C Male 175.9
Sample D Male 92.2
Superior colliculi
nTPM: 141.6
Samples: 4

Max nTPM: 178.7
Min nTPM: 80.0
Sample A Female 142.3
Sample B Female 80.0
Sample C Male 178.7
Sample D Male 165.2

MIDBRAIN - Mouse RNA-seqi
Average nTPM 126.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 126.4
Samples: 4

Max nTPM: 129.4
Min nTPM: 122.1
Sample A Male 122.1
Sample B Male 125.1
Sample C Female 129.0
Sample D Female 129.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 10.0
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 10.0
74047777 Antisense, RP_051214_02_A02, Mouse strain C57BL/6J (56 days, male) 17.3
68203494 Antisense, RP_041208_01_D02, Mouse strain C57BL/6J (56 days, male) 12.6
70795892 Antisense, RP_050712_02_B09, Mouse strain C57BL/6J (56 days, male) 6.1
74750065 Antisense, RP_060220_05_F07, Mouse strain C57BL/6J (56 days, male) 4.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
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