MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:65.8 nTPM
HPA:65.8 nTPM
GTEx:53.6 nTPM
FANTOM5:103.9 Scaled Tags Per Million
Pig:24.2 nTPM
Mouse:4.1 nTPM
Allen mouse:6.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 65.8
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.3
1830 Male, age 51, unknown 68.1
1870 Female, age 42, unknown 66.3
1833 Male, age 53, unknown 65.1
2019 Male, age 18, unknown 64.9
2411 Female, age 72, unknown 63.9
2828 Female, age 72, unknown 62.0
1827 Male, age 72, unknown 61.9
2666 Male, age 74, left hemisphere 60.7
2219 Male, age 76, both hemispheres 57.1
2586 Male, age 75, left hemisphere 52.7
Dorsal raphe nucleus
nTPM: 60.7
2750 Male, age 76, both hemispheres 66.0
2016 Female, age 72, unknown 62.4
2047 Male, age 72, unknown 59.5
1828 Male, age 53, unknown 58.7
2298 Female, age 72, unknown 56.6
Inferior colliculus
nTPM: 61.6
1890 Male, age 53, unknown 63.7
2097 Female, age 72, unknown 61.8
1848 Female, age 42, unknown 61.1
2849 Male, age 72, unknown 59.6
Median raphe nucleus
nTPM: 61.7
2220 Male, age 76, midline 61.7
Pedunculopontine tegmental nucleus
nTPM: 65.8
2338 Male, age 61, both hemispheres 73.1
2334 Male, age 80, both hemispheres 62.9
1921 Female, age 85, both hemispheres 61.5
Periaquaductal grey, anterior
nTPM: 57.9
1947 Male, age 18, unknown 58.5
2502 Female, age 75, unknown 58.1
1795 Male, age 51, unknown 57.2
Periaquaductal grey, dorsal
nTPM: 61.7
2850 Male, age 76, both hemispheres 63.8
1831 Male, age 72, unknown 61.8
2464 Female, age 72, unknown 61.6
1840 Male, age 53, unknown 59.7
Periaquaductal grey, lateral
nTPM: 62.3
2272 Male, age 74, both hemispheres 63.9
2140 Male, age 76, both hemispheres 63.1
2053 Male, age 18, unknown 59.9
Pretectal area
nTPM: 60.4
2316 Male, age 76, right hemisphere 63.2
2273 Male, age 74, both hemispheres 62.9
1815 Male, age 53, unknown 61.1
2825 Male, age 18, unknown 61.0
2007 Male, age 72, unknown 60.9
1944 Female, age 72, unknown 60.8
1817 Female, age 42, unknown 60.4
2224 Female, age 72, unknown 59.7
2407 Male, age 75, both hemispheres 59.4
2667 Female, age 75, unknown 57.9
1816 Male, age 51, unknown 57.0
Red nucleus
nTPM: 65.4
2823 Male, age 76, right hemisphere 71.9
2503 Female, age 72, unknown 69.5
1904 Male, age 53, unknown 67.7
2785 Male, age 18, unknown 67.5
1865 Male, age 51, unknown 67.4
1954 Female, age 42, unknown 66.1
1821 Female, age 72, unknown 65.2
2227 Male, age 72, unknown 64.6
2769 Male, age 72, unknown 63.6
2588 Male, age 74, left hemisphere 61.1
2725 Female, age 75, unknown 60.1
2584 Male, age 75, left hemisphere 59.8
Substantia nigra
nTPM: 59.6
2590 Female, age 75, unknown 66.4
2583 Male, age 75, right hemisphere 63.0
1889 Female, age 72, unknown 62.8
2699 Male, age 18, unknown 59.9
2409 Female, age 72, unknown 59.4
2665 Male, age 74, both hemispheres 59.3
2241 Male, age 72, unknown 58.2
1851 Male, age 51, unknown 57.3
1941 Male, age 53, unknown 56.1
1916 Female, age 42, unknown 52.9
Superior colliculus
nTPM: 61.7
1913 Female, age 42, unknown 69.1
1995 Male, age 72, unknown 67.1
2587 Male, age 74, left hemisphere 64.9
1895 Male, age 76, right hemisphere 63.3
2087 Female, age 72, unknown 62.5
2668 Female, age 75, unknown 61.8
1839 Male, age 51, unknown 60.8
1796 Male, age 53, unknown 59.3
2261 Male, age 18, unknown 57.2
2664 Male, age 75, both hemispheres 51.1
Ventral tegmental area
nTPM: 60.1
2223 Female, age 72, unknown 62.6
2021 Male, age 53, unknown 61.6
1942 Male, age 51, unknown 59.8
2218 Male, age 76, both hemispheres 59.2
2410 Female, age 72, unknown 59.0
1915 Female, age 42, unknown 58.2

MIDBRAIN - GTEx RNA-seqi
Average nTPM 53.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 53.6
Samples: 139

Max nTPM: 126.2
Min nTPM: 20.2
Std nTPM: 15.7
Median nTPM: 51.6
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 126.2
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 96.9
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 96.5
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 93.9
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 93.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 92.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 86.6
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 82.3
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 81.4
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 77.6
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 74.5
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 103.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 103.9
FF:10158-103A5 76 years, female 103.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 24.2
Pig sample Sample description nTPM
Midbrain
nTPM: 23.6
Samples: 4

Max nTPM: 26.4
Min nTPM: 20.9
Sample A Female 25.7
Sample B Female 26.4
Sample C Male 21.2
Sample D Male 20.9
Periaqueductal gray
nTPM: 23.5
Samples: 3

Max nTPM: 26.2
Min nTPM: 21.9
Sample B Female 26.2
Sample C Male 22.4
Sample D Male 21.9
Substantia nigra
nTPM: 24.2
Samples: 4

Max nTPM: 27.8
Min nTPM: 20.3
Sample A Female 20.3
Sample B Female 27.5
Sample C Male 21.3
Sample D Male 27.8
Superior colliculi
nTPM: 22.8
Samples: 4

Max nTPM: 29.6
Min nTPM: 20.3
Sample A Female 20.3
Sample B Female 29.6
Sample C Male 20.6
Sample D Male 20.5

MIDBRAIN - Mouse RNA-seqi
Average nTPM 4.1
Mouse sample Sample description nTPM
Midbrain
nTPM: 4.1
Samples: 4

Max nTPM: 4.3
Min nTPM: 4.0
Sample A Male 4.1
Sample B Male 4.0
Sample C Female 4.3
Sample D Female 4.1

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 6.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 6.5
2027 Antisense, RP_040420_01_A12, Mouse strain C57BL/6J (56 days, male) 6.5
2028 Antisense, RP_040420_01_A12, Mouse strain C57BL/6J (56 days, male) 5.7

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.