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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:50.9 nTPM
HPA:50.9 nTPM
GTEx:59.5 nTPM
FANTOM5:68.9 Scaled Tags Per Million
Pig:16.8 nTPM
Mouse:31.6 nTPM
Allen mouse:0.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 50.9
Sample id Sample description nTPM
Amygdala
nTPM: 50.9
2695 Female, age 67, right hemisphere 57.8
1987 Female, age 91, left hemisphere 51.5
2814 Male, age 76, right hemisphere 51.1
2514 Male, age 75, right hemisphere 47.4
2517 Female, age 94, left hemisphere 46.9
Basal amygdala
nTPM: 46.5
2609 Male, age 75, right hemisphere 53.6
2110 Male, age 80, left hemisphere 49.8
1955 Male, age 76, both hemispheres 46.6
2243 Female, age 91, right hemisphere 44.9
2685 Female, age 94, left hemisphere 42.3
2827 Female, age 67, right hemisphere 41.6
Central amygdala
nTPM: 49.6
2515 Male, age 75, right hemisphere 55.0
1905 Male, age 76, both hemispheres 50.2
2239 Male, age 80, left hemisphere 49.2
2826 Female, age 94, left hemisphere 48.6
2701 Female, age 91, right hemisphere 45.1
Corticomedial amygdala
nTPM: 44.4
2428 Male, age 75, right hemisphere 50.7
2829 Male, age 80, left hemisphere 49.0
2242 Female, age 91, right hemisphere 44.4
2429 Female, age 94, left hemisphere 41.1
2240 Male, age 76, both hemispheres 40.8
2535 Female, age 67, right hemisphere 40.5
Lateral amygdala
nTPM: 47.4
2516 Male, age 75, right hemisphere 53.0
2256 Male, age 80, left hemisphere 51.3
2255 Female, age 91, right hemisphere 47.8
1883 Male, age 76, both hemispheres 44.9
2830 Female, age 67, right hemisphere 43.9
2534 Female, age 94, left hemisphere 43.4
Stria terminalis, bed nucleus
nTPM: 40.1
2201 Male, age 74, unknown 44.8
1974 Female, age 91, both hemispheres 38.1
2486 Female, age 94, both hemispheres 37.5

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 59.5
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 59.5
Samples: 152

Max nTPM: 182.5
Min nTPM: 14.9
Std nTPM: 26.6
Median nTPM: 54.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 182.5
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 141.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 134.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 133.0
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 130.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 125.1
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 115.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 115.0
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 110.6
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 100.1
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 96.4
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 95.8
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 94.1
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 93.4
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 93.2
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 93.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 89.6
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 89.6
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 89.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 85.6
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 85.2
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 85.1
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 84.1
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 83.4
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 81.3
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 80.9
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 80.9
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 80.8
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 80.7
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 80.6
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 79.7
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 79.4
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 75.9
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 75.6
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 75.2
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 74.7
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 72.6
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 72.2
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 71.9
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 71.4
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 69.9
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 69.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 69.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 68.6
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 68.0
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 67.0
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 66.9
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 66.6
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 66.6
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 65.8
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 65.0
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 64.9
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 64.7
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 64.5
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 63.9
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 63.8
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 63.6
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 63.1
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 62.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 62.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 61.4
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 61.4
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 60.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 60.7
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 59.0
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 59.0
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 57.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 57.3
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 56.1
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 55.6
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 55.5
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 55.4
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 54.9
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 54.7
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 54.7
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 54.5
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 54.5
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 54.4
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 52.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 52.7
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 52.5
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 51.9
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 51.3
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 50.7
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 50.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 50.5
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 48.7
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 48.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 48.1
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 48.0
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 47.7
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 47.6
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 47.3
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 47.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 47.0
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 46.4
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 45.9
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 45.9
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 45.8
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 45.4
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 45.4
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 45.1
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 45.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 44.8
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 44.7
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 44.6
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 44.5
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 43.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 43.6
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 43.5
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 43.4
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 42.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 42.6
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 42.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 42.0
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 41.8
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 41.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 41.4
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 41.4
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 41.2
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 41.0
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 40.5
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 40.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 39.6
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 38.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 38.7
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 37.0
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 36.3
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 35.9
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 35.8
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 35.0
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 34.3
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 32.3
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 31.7
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 31.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 31.3
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 30.5
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 29.8
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 29.4
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 27.6
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 27.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 26.9
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 26.2
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 26.2
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 25.8
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 25.3
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 24.4
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 23.2
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 23.0
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 20.9
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 19.1
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 14.9
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 68.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 68.9
FF:10151-102I7 76 years, female 68.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 16.8
Pig sample Sample description nTPM
Amygdala
nTPM: 16.8
Samples: 4

Max nTPM: 18.3
Min nTPM: 15.6
Sample A Female 15.6
Sample B Female 17.4
Sample C Male 18.3
Sample D Male 15.8

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 31.6
Mouse sample Sample description nTPM
Amygdala
nTPM: 31.6
Samples: 4

Max nTPM: 38.8
Min nTPM: 27.8
Sample A Male 27.8
Sample B Male 28.5
Sample C Female 38.8
Sample D Female 31.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 0.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 0.3
67881784 Antisense, RP_040923_01_A02, Mouse strain C57BL/6J (56 days, male) 0.3

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