MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:39.0 nTPM
HPA:39.0 nTPM
GTEx:30.4 nTPM
FANTOM5:64.0 Scaled Tags Per Million
Pig:69.3 nTPM
Mouse:123.7 nTPM
Allen mouse:8.5 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 39.0
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 36.3
2586 Male, age 75, left hemisphere 37.5
2219 Male, age 76, both hemispheres 36.9
1870 Female, age 42, unknown 36.8
2411 Female, age 72, unknown 36.7
1827 Male, age 72, unknown 36.6
2666 Male, age 74, left hemisphere 36.4
1833 Male, age 53, unknown 36.0
1830 Male, age 51, unknown 35.7
2828 Female, age 72, unknown 35.5
2019 Male, age 18, unknown 34.8
Dorsal raphe nucleus
nTPM: 36.6
1828 Male, age 53, unknown 37.2
2047 Male, age 72, unknown 37.2
2750 Male, age 76, both hemispheres 37.1
2298 Female, age 72, unknown 36.8
2016 Female, age 72, unknown 34.5
Inferior colliculus
nTPM: 35.7
2849 Male, age 72, unknown 38.0
1848 Female, age 42, unknown 35.7
2097 Female, age 72, unknown 34.7
1890 Male, age 53, unknown 34.2
Median raphe nucleus
nTPM: 39.0
2220 Male, age 76, midline 39.0
Pedunculopontine tegmental nucleus
nTPM: 36.8
2334 Male, age 80, both hemispheres 38.1
1921 Female, age 85, both hemispheres 37.0
2338 Male, age 61, both hemispheres 35.2
Periaquaductal grey, anterior
nTPM: 36.4
1795 Male, age 51, unknown 36.6
2502 Female, age 75, unknown 36.3
1947 Male, age 18, unknown 36.2
Periaquaductal grey, dorsal
nTPM: 35.8
2850 Male, age 76, both hemispheres 36.7
1840 Male, age 53, unknown 36.6
2464 Female, age 72, unknown 35.6
1831 Male, age 72, unknown 34.3
Periaquaductal grey, lateral
nTPM: 34.2
2053 Male, age 18, unknown 34.6
2140 Male, age 76, both hemispheres 34.5
2272 Male, age 74, both hemispheres 33.4
Pretectal area
nTPM: 35.9
1817 Female, age 42, unknown 38.2
1944 Female, age 72, unknown 37.7
1816 Male, age 51, unknown 37.2
2007 Male, age 72, unknown 36.8
1815 Male, age 53, unknown 36.6
2825 Male, age 18, unknown 36.5
2224 Female, age 72, unknown 35.7
2407 Male, age 75, both hemispheres 34.7
2316 Male, age 76, right hemisphere 34.2
2273 Male, age 74, both hemispheres 33.9
2667 Female, age 75, unknown 33.8
Red nucleus
nTPM: 35.0
1821 Female, age 72, unknown 36.0
2584 Male, age 75, left hemisphere 35.8
2785 Male, age 18, unknown 35.8
2588 Male, age 74, left hemisphere 35.5
2823 Male, age 76, right hemisphere 35.5
2725 Female, age 75, unknown 35.2
2227 Male, age 72, unknown 35.0
2503 Female, age 72, unknown 34.9
2769 Male, age 72, unknown 34.7
1954 Female, age 42, unknown 34.5
1865 Male, age 51, unknown 34.1
1904 Male, age 53, unknown 33.3
Substantia nigra
nTPM: 36.7
1916 Female, age 42, unknown 39.2
1941 Male, age 53, unknown 38.9
1889 Female, age 72, unknown 37.6
2241 Male, age 72, unknown 37.1
1851 Male, age 51, unknown 37.0
2590 Female, age 75, unknown 35.8
2699 Male, age 18, unknown 35.8
2583 Male, age 75, right hemisphere 35.4
2665 Male, age 74, both hemispheres 35.2
2409 Female, age 72, unknown 34.8
Superior colliculus
nTPM: 35.6
2668 Female, age 75, unknown 38.6
1796 Male, age 53, unknown 36.2
1895 Male, age 76, right hemisphere 36.1
2261 Male, age 18, unknown 36.1
1839 Male, age 51, unknown 36.0
2087 Female, age 72, unknown 35.8
2587 Male, age 74, left hemisphere 35.3
1913 Female, age 42, unknown 34.3
2664 Male, age 75, both hemispheres 34.3
1995 Male, age 72, unknown 33.2
Ventral tegmental area
nTPM: 36.3
1915 Female, age 42, unknown 37.8
2410 Female, age 72, unknown 36.8
2218 Male, age 76, both hemispheres 36.4
2223 Female, age 72, unknown 36.3
1942 Male, age 51, unknown 35.6
2021 Male, age 53, unknown 35.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 30.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 30.4
Samples: 139

Max nTPM: 50.7
Min nTPM: 19.8
Std nTPM: 5.3
Median nTPM: 30.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 50.7
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 44.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 42.8
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 42.1
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 41.1
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 41.0
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 40.6
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 40.4
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 39.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 39.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 38.3
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 64.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 64.0
FF:10158-103A5 76 years, female 64.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 69.3
Pig sample Sample description nTPM
Midbrain
nTPM: 65.9
Samples: 4

Max nTPM: 69.0
Min nTPM: 64.3
Sample A Female 69.0
Sample B Female 64.9
Sample C Male 65.2
Sample D Male 64.3
Periaqueductal gray
nTPM: 60.9
Samples: 3

Max nTPM: 74.9
Min nTPM: 53.4
Sample B Female 54.5
Sample C Male 74.9
Sample D Male 53.4
Substantia nigra
nTPM: 69.3
Samples: 4

Max nTPM: 90.7
Min nTPM: 49.8
Sample A Female 90.7
Sample B Female 51.2
Sample C Male 85.5
Sample D Male 49.8
Superior colliculi
nTPM: 63.6
Samples: 4

Max nTPM: 74.7
Min nTPM: 43.0
Sample A Female 74.7
Sample B Female 43.0
Sample C Male 70.9
Sample D Male 65.9

MIDBRAIN - Mouse RNA-seqi
Average nTPM 123.7
Mouse sample Sample description nTPM
Midbrain
nTPM: 123.7
Samples: 4

Max nTPM: 126.8
Min nTPM: 118.5
Sample A Male 126.8
Sample B Male 123.0
Sample C Female 118.5
Sample D Female 126.3

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.5
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.5
69782413 Antisense, RP_050505_02_H12, Mouse strain C57BL/6J (56 days, male) 8.5

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.