BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Low
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:39.5 nTPM
HPA:39.5 nTPM
GTEx:28.8 nTPM
FANTOM5:85.7 Scaled Tags Per Million
Pig:52.0 nTPM
Mouse:127.2 nTPM
Allen mouse:7.6 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA047108Antibody HPA050628
Glial cells Not detectedNot detected
Neuronal cells Not detectedLow



BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 39.5
Sample id Sample description nTPM
Caudate nucleus
nTPM: 36.8
2288 Male, age 75, left hemisphere 38.3
1781 Male, age 74, unknown 37.6
2846 Female, age 79, unknown 37.6
1854 Male, age 80, left hemisphere 37.3
2481 Female, age 94, left hemisphere 36.6
2290 Female, age 72, unknown 36.4
1857 Female, age 85, left hemisphere 36.0
2289 Male, age 61, right hemisphere 35.0
Claustrum
nTPM: 37.5
2198 Male, age 80, both hemispheres 38.9
2645 Female, age 72, unknown 38.4
1956 Male, age 74, unknown 38.0
2491 Male, age 75, both hemispheres 37.6
2392 Female, age 94, both hemispheres 37.4
2284 Female, age 91, both hemispheres 37.3
2196 Female, age 79, unknown 37.2
2568 Male, age 61, both hemispheres 37.2
2292 Female, age 85, both hemispheres 35.5
Globus pallidus, externus
nTPM: 36.2
1996 Male, age 80, right hemisphere 37.5
2772 Female, age 79, unknown 37.4
2646 Male, age 61, right hemisphere 36.3
2395 Male, age 75, both hemispheres 35.6
2567 Female, age 72, unknown 34.5
Globus pallidus, internus
nTPM: 36.9
2287 Male, age 75, right hemisphere 40.3
2483 Female, age 94, right hemisphere 38.5
1818 Male, age 74, unknown 37.7
2778 Female, age 91, both hemispheres 37.0
2566 Female, age 72, unknown 35.4
2037 Male, age 80, right hemisphere 35.1
2111 Female, age 85, right hemisphere 34.3
Nucleus accumbens
nTPM: 37.5
1856 Female, age 91, right hemisphere 39.5
2286 Male, age 75, left hemisphere 39.0
1783 Male, age 74, unknown 38.7
2698 Female, age 72, unknown 37.9
2391 Female, age 94, left hemisphere 37.4
2824 Male, age 61, right hemisphere 36.9
1806 Female, age 85, left hemisphere 36.0
2732 Male, age 80, right hemisphere 34.4
Nucleus basalis of Meynert
nTPM: 36.1
2569 Male, age 61, both hemispheres 37.6
2393 Male, age 80, right hemisphere 36.1
2821 Male, age 75, both hemispheres 35.5
2484 Female, age 94, left hemisphere 35.0
Nucleus of the diagonal band
nTPM: 39.5
2775 Male, age 80, right hemisphere 41.2
1812 Female, age 91, both hemispheres 41.1
2195 Female, age 85, both hemispheres 40.8
2029 Male, age 61, right hemisphere 38.5
1979 Male, age 74, unknown 35.9
Olfactory tubercle
nTPM: 39.2
1998 Female, age 91, both hemispheres 40.3
1846 Male, age 80, right hemisphere 39.8
2487 Female, age 94, left hemisphere 38.6
2856 Male, age 75, right hemisphere 37.9
Putamen
nTPM: 36.7
1838 Male, age 80, right hemisphere 39.0
1937 Female, age 91, right hemisphere 37.4
2482 Female, age 94, left hemisphere 37.3
2647 Male, age 75, left hemisphere 36.2
1829 Male, age 74, unknown 36.0
2466 Female, age 79, unknown 36.0
2489 Female, age 72, unknown 35.1
Septal nuclei
nTPM: 38.0
1960 Male, age 74, unknown 40.7
2031 Female, age 72, unknown 40.7
2629 Female, age 94, right hemisphere 39.8
2009 Female, age 91, both hemispheres 39.0
2059 Female, age 85, both hemispheres 36.9
2394 Male, age 61, left hemisphere 35.2
2199 Male, age 80, right hemisphere 34.0

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 28.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 26.8
Samples: 246

Max nTPM: 47.2
Min nTPM: 17.8
Std nTPM: 4.9
Median nTPM: 26.0
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 47.2
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 44.7
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 43.5
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 42.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 40.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 39.8
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 38.8
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 38.3
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 37.4
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 37.3
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 36.2
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 28.8
Samples: 246

Max nTPM: 46.8
Min nTPM: 16.8
Std nTPM: 5.2
Median nTPM: 28.4
GTEX-12ZZW-0011-R6a-SM-5DUVZ 50-59 years, male 46.8
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 46.8
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 46.1
GTEX-1IGQW-0011-R6a-SM-CM2TC 60-69 years, male 45.2
GTEX-1LC47-0011-R6b-SM-EZ6MI 60-69 years, male 44.7
GTEX-1JJEA-0011-R6a-SM-EXUS1 60-69 years, male 41.8
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 41.1
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 40.7
GTEX-1HUB1-0011-R6b-SM-ARU6W 60-69 years, male 40.6
GTEX-144GO-0011-R6b-SM-5S2V7 60-69 years, male 40.5
GTEX-17MF6-0011-R6b-SM-7LG6G 40-49 years, male 39.8
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Brain - Putamen (basal ganglia)
Average nTPM: 28.7
Samples: 205

Max nTPM: 48.8
Min nTPM: 19.9
Std nTPM: 4.9
Median nTPM: 28.0
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 48.8
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 48.7
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 44.3
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 40.2
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 39.4
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 39.1
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 38.0
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 37.9
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 37.8
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 37.4
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 37.3
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 85.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 76.8
FF:10164-103B2 76 years, female 76.8
Globus pallidus
Scaled Tags Per Million: 63.6
FF:10161-103A8 76 years, female 66.4
FF:10175-103C4 60 years, female 60.7
Nucleus accumbens
Scaled Tags Per Million: 85.7
FF:10037-101F1 23-56 years, mixed 85.7
Putamen
Scaled Tags Per Million: 83.5
FF:10176-103C5 60 years, female 83.5

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 52.0
Pig sample Sample description nTPM
Caudate
nTPM: 46.1
Samples: 4

Max nTPM: 52.8
Min nTPM: 40.2
Sample A Female 43.4
Sample B Female 48.0
Sample C Male 52.8
Sample D Male 40.2
Putamen
nTPM: 51.6
Samples: 4

Max nTPM: 62.1
Min nTPM: 40.0
Sample A Female 50.0
Sample B Female 40.0
Sample C Male 62.1
Sample D Male 54.4
Septum
nTPM: 52.0
Samples: 4

Max nTPM: 65.1
Min nTPM: 43.4
Sample A Female 50.8
Sample B Female 43.4
Sample C Male 65.1
Sample D Male 48.7
Ventral pallidum
nTPM: 49.4
Samples: 4

Max nTPM: 64.8
Min nTPM: 42.9
Sample A Female 42.9
Sample B Female 44.7
Sample C Male 64.8
Sample D Male 45.0

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 127.2
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 101.2
Samples: 4

Max nTPM: 104.5
Min nTPM: 97.4
Sample A Male 104.4
Sample B Male 98.3
Sample C Female 104.5
Sample D Female 97.4
Septum
nTPM: 127.2
Samples: 4

Max nTPM: 132.1
Min nTPM: 122.6
Sample A Male 132.1
Sample B Male 122.6
Sample C Female 127.6
Sample D Female 126.6
Ventral forebrain
nTPM: 116.2
Samples: 4

Max nTPM: 123.3
Min nTPM: 109.4
Sample A Male 109.4
Sample B Male 119.7
Sample C Female 123.3
Sample D Female 112.5

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 7.6
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 6.5
69782413 Antisense, RP_050505_02_H12, Mouse strain C57BL/6J (56 days, male) 6.5
Pallidum
Expression energy: 7.6
69782413 Antisense, RP_050505_02_H12, Mouse strain C57BL/6J (56 days, male) 7.6

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