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TISSUE PRIMARY DATA KIDNEY Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN ORAL MUCOSA OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Kidney
Tissue proteome
Kidney
KIDNEY - Expression summary
Protein expression
Kidneyi

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Cells in glomeruli: Not detected
Cells in tubules: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:59.3 nTPM
HPA:59.3 nTPM
GTEx:52.3 nTPM
FANTOM5:107.3 Scaled Tags Per Million

KIDNEY - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA051187Antibody HPA076450Antibody CAB020679
Cells in glomeruli Not detectedNot detectedLow
Cells in tubules MediumHighMedium







KIDNEY - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 59.3
overview
Female, age 58
Kidney sample 55
nTPM: 85.6
Cell types%
Cells in tubules:
60

Cells in glomeruli:
20

Fibroblasts:
5

Other cell types:
15

overview
Female, age 67
Kidney sample 56
nTPM: 86.6
Cell types%
Cells in tubules:
70

Cells in glomeruli:
15

Fibroblasts:
10

Other cell types:
5

overview
Female, age 55
Kidney sample 57
nTPM: 42.4
Cell types%
Cells in tubules:
80

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
5

overview
Male, age 46
Kidney sample 58
nTPM: 74.9
Cell types%
Cells in tubules:
60

Cells in glomeruli:
25

Fibroblasts:
5

Other cell types:
10

overview
Female, age 57
Kidney sample 358
nTPM: 44.3
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Male, age 78
Kidney sample 377
nTPM: 41.8
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
5

Other cell types:
20

overview
Male, age 73
Kidney sample 380
nTPM: 71.4
Cell types%
Cells in tubules:
60

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
20

overview
Female, age 59
Kidney sample 394
nTPM: 44.3
Cell types%
Cells in tubules:
65

Cells in glomeruli:
10

Fibroblasts:
10

Other cell types:
15

overview
Female, age 48
Kidney sample 414
nTPM: 42
Cell types%
Cells in tubules:
60

Cells in glomeruli:
5

Fibroblasts:
10

Other cell types:
25


KIDNEY - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 52.3
GTEx sample id Sample description nTPM
Kidney - Cortex
Average nTPM: 52.3
Samples: 85

Max nTPM: 152.9
Min nTPM: 27.1
Std nTPM: 23.9
Median nTPM: 43.6
GTEX-T6MN-1826-SM-EXOHN 50-59 years, male 152.9
GTEX-13NYB-1726-SM-5N9G2 40-49 years, male 138.1
GTEX-1JMQJ-1726-SM-E9U4V 50-59 years, male 135.2
GTEX-14E6D-2526-SM-5YYA9 50-59 years, male 115.2
GTEX-1JMPZ-1226-SM-ARU8Y 30-39 years, male 89.6
GTEX-14C5O-2026-SM-5YYB1 60-69 years, male 88.7
GTEX-1NV8Z-2226-SM-EXOJ2 60-69 years, male 88.3
GTEX-1R9PO-1626-SM-E6CPT 60-69 years, female 80.9
GTEX-15CHQ-2126-SM-6871M 60-69 years, male 77.1
GTEX-16MT8-1926-SM-7EPGL 60-69 years, female 72.2
GTEX-17HHY-2326-SM-7KFSR 50-59 years, male 71.3
GTEX-1H3NZ-2126-SM-9WPQ6 60-69 years, male 69.2
GTEX-13OW6-1826-SM-5N9F9 50-59 years, male 68.9
GTEX-T5JC-1526-SM-4DM68 20-29 years, male 68.4
GTEX-1GTWX-1826-SM-9QEHG 60-69 years, male 68.3
GTEX-1PWST-2226-SM-EVR3G 70-79 years, male 67.9
GTEX-1KWVE-0826-SM-CXZKO 30-39 years, male 67.1
GTEX-QLQW-1626-SM-CMKFE 30-39 years, male 64.9
GTEX-1K9T9-1826-SM-CXZK2 50-59 years, female 63.4
GTEX-1BAJH-1826-SM-731DA 70-79 years, male 61.3
GTEX-11OF3-1326-SM-5N9FJ 60-69 years, male 60.0
GTEX-O5YV-1226-SM-EV795 60-69 years, female 59.9
GTEX-1IKK5-0926-SM-A9G2U 60-69 years, male 59.4
GTEX-1JMQK-1926-SM-CJI3B 60-69 years, male 59.4
GTEX-1GF9V-1926-SM-9JGHE 60-69 years, male 59.0
GTEX-1HB9E-1826-SM-D4P33 50-59 years, male 58.5
GTEX-1GF9W-1326-SM-7P8PX 60-69 years, male 58.3
GTEX-12WSG-0826-SM-5EQ5A 50-59 years, female 56.3
GTEX-1J1OQ-1426-SM-AHZ3P 40-49 years, female 55.2
GTEX-1GMR3-2426-SM-7MXV2 40-49 years, male 55.0
GTEX-XPVG-0526-SM-4B65N 50-59 years, male 54.6
GTEX-QDT8-1726-SM-EYYV6 30-39 years, female 53.2
GTEX-15DYW-2026-SM-6AJBD 60-69 years, female 51.3
GTEX-11TTK-1926-SM-5PNW8 60-69 years, female 51.0
GTEX-Y5V6-2026-SM-5IFHO 60-69 years, male 50.4
GTEX-1QP6S-1526-SM-EXUSG 40-49 years, male 49.2
GTEX-1N2EF-1426-SM-EXUSH 60-69 years, male 49.1
GTEX-145MN-0326-SM-5QGQI 30-39 years, male 49.0
GTEX-1HBPI-2026-SM-CE6RZ 50-59 years, male 46.8
GTEX-1C6VQ-2326-SM-7IGN1 50-59 years, male 45.1
GTEX-P4QS-1126-SM-3NMD5 60-69 years, male 44.8
GTEX-1EKGG-2226-SM-7IGOA 60-69 years, male 44.5
GTEX-17F97-1926-SM-7IGM4 50-59 years, male 43.6
GTEX-17F96-1926-SM-7MGWY 70-79 years, male 42.6
GTEX-13OVI-1126-SM-5KLZF 60-69 years, female 41.8
GTEX-ZYT6-2226-SM-5GIC9 30-39 years, male 41.6
GTEX-1HCU7-1826-SM-A9G2A 50-59 years, male 41.0
GTEX-1OJC4-2326-SM-DTXA5 50-59 years, female 41.0
GTEX-S33H-1426-SM-EZ6L7 30-39 years, male 40.9
GTEX-1497J-0826-SM-5NQAJ 60-69 years, male 40.8
GTEX-13OVL-1826-SM-5KLZR 50-59 years, male 40.5
GTEX-1JMLX-1526-SM-AHZ3N 50-59 years, male 40.4
GTEX-1A8FM-2026-SM-7P8RN 50-59 years, female 40.1
GTEX-1MUQO-2526-SM-E9TJN 60-69 years, male 40.0
GTEX-1IL2V-1826-SM-ARU7R 70-79 years, male 39.9
GTEX-1I1GP-1926-SM-CNNQU 50-59 years, male 39.5
GTEX-1N2DW-1826-SM-EAZ54 50-59 years, male 39.4
GTEX-13RTJ-2226-SM-5S2Q1 60-69 years, male 39.1
GTEX-11GS4-2326-SM-5A5KS 60-69 years, male 39.0
GTEX-1LG7Y-2726-SM-D5OVW 50-59 years, male 39.0
GTEX-1AX8Z-2326-SM-731CR 60-69 years, male 38.9
GTEX-1399S-0526-SM-5IJG8 30-39 years, female 38.7
GTEX-ZYFG-1626-SM-5GZYY 60-69 years, female 38.4
GTEX-1A3MW-2226-SM-73KUX 60-69 years, female 37.3
GTEX-1CB4J-1926-SM-7MGX8 60-69 years, male 37.3
GTEX-1GN1U-2126-SM-AHZ4J 50-59 years, female 37.3
GTEX-REY6-1826-SM-EAZAT 60-69 years, male 37.1
GTEX-ZC5H-1726-SM-5HL7X 40-49 years, female 35.6
GTEX-1E2YA-1626-SM-7MGXS 50-59 years, male 35.0
GTEX-13112-2126-SM-5GCO4 50-59 years, male 34.5
GTEX-1JJ6O-2526-SM-AHZ3J 60-69 years, male 33.8
GTEX-147F4-2626-SM-5Q5CS 50-59 years, male 33.6
GTEX-RN64-1626-SM-48FD7 50-59 years, male 32.8
GTEX-1F48J-2226-SM-7MXTN 50-59 years, female 32.8
GTEX-12696-0926-SM-5FQTV 60-69 years, male 32.5
GTEX-14C39-2126-SM-664OH 40-49 years, male 32.5
GTEX-ZVZP-0926-SM-5GIDB 50-59 years, male 31.6
GTEX-ZE9C-1426-SM-4WKGM 60-69 years, male 31.1
GTEX-ZDXO-0226-SM-4WKH7 60-69 years, male 30.9
GTEX-QDVN-1626-SM-48TZC 50-59 years, male 30.6
GTEX-ZLFU-0926-SM-5P9F8 40-49 years, male 30.2
GTEX-13O1R-2526-SM-5N9FW 60-69 years, male 30.1
GTEX-Y5V5-1226-SM-EYYVP 60-69 years, female 29.7
GTEX-NPJ8-2226-SM-3TW8D 40-49 years, male 29.0
GTEX-1H3VY-1926-SM-9JGHJ 50-59 years, male 27.1
Show allShow less
Kidney - Medulla
Average nTPM: 36.0
Samples: 4

Max nTPM: 50.1
Min nTPM: 29.8
Std nTPM: 8.2
Median nTPM: 32.1
GTEX-RU72-1926-SM-EAZ3F 50-59 years, female 50.1
GTEX-R55E-2026-SM-EZ6L1 20-29 years, male 32.4
GTEX-TKQ2-0626-SM-EZ6LB 50-59 years, male 31.8
GTEX-T5JC-1626-SM-EZ6KW 20-29 years, male 29.8

KIDNEY - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 107.3
FANTOM5 sample id Sample description Scaled Tags Per Million
Kidney
Scaled Tags Per Million: 107.3
FF:10017-101C8 60,62,63 years, female 107.3

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