MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:807.2 nTPM
HPA:807.2 nTPM
GTEx:834.9 nTPM
FANTOM5:24.9 Scaled Tags Per Million
Pig:595.2 nTPM
Mouse:463.9 nTPM
Allen mouse:17.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 807.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 779.5
2586 Male, age 75, left hemisphere 826.5
2666 Male, age 74, left hemisphere 800.4
1870 Female, age 42, unknown 788.2
2411 Female, age 72, unknown 783.4
2219 Male, age 76, both hemispheres 774.6
1827 Male, age 72, unknown 774.0
1833 Male, age 53, unknown 770.3
1830 Male, age 51, unknown 765.7
2828 Female, age 72, unknown 760.7
2019 Male, age 18, unknown 751.6
Dorsal raphe nucleus
nTPM: 773.1
2750 Male, age 76, both hemispheres 778.7
2298 Female, age 72, unknown 774.7
2016 Female, age 72, unknown 771.4
1828 Male, age 53, unknown 770.9
2047 Male, age 72, unknown 769.8
Inferior colliculus
nTPM: 777.4
1890 Male, age 53, unknown 782.7
2849 Male, age 72, unknown 777.6
1848 Female, age 42, unknown 776.4
2097 Female, age 72, unknown 772.9
Median raphe nucleus
nTPM: 776.9
2220 Male, age 76, midline 776.9
Pedunculopontine tegmental nucleus
nTPM: 784.7
2338 Male, age 61, both hemispheres 805.6
2334 Male, age 80, both hemispheres 792.4
1921 Female, age 85, both hemispheres 756.1
Periaquaductal grey, anterior
nTPM: 774.4
2502 Female, age 75, unknown 784.1
1947 Male, age 18, unknown 777.2
1795 Male, age 51, unknown 761.9
Periaquaductal grey, dorsal
nTPM: 765.1
1840 Male, age 53, unknown 790.1
2464 Female, age 72, unknown 774.1
1831 Male, age 72, unknown 761.4
2850 Male, age 76, both hemispheres 734.8
Periaquaductal grey, lateral
nTPM: 742.8
2053 Male, age 18, unknown 768.2
2272 Male, age 74, both hemispheres 736.2
2140 Male, age 76, both hemispheres 723.9
Pretectal area
nTPM: 759.3
2825 Male, age 18, unknown 774.2
2407 Male, age 75, both hemispheres 773.1
1816 Male, age 51, unknown 762.1
1817 Female, age 42, unknown 761.9
1944 Female, age 72, unknown 761.8
1815 Male, age 53, unknown 761.2
2224 Female, age 72, unknown 760.5
2007 Male, age 72, unknown 759.3
2316 Male, age 76, right hemisphere 752.4
2667 Female, age 75, unknown 746.4
2273 Male, age 74, both hemispheres 740.0
Red nucleus
nTPM: 777.0
2503 Female, age 72, unknown 802.7
2584 Male, age 75, left hemisphere 799.9
1821 Female, age 72, unknown 796.3
1865 Male, age 51, unknown 790.9
2588 Male, age 74, left hemisphere 777.5
2227 Male, age 72, unknown 775.6
1904 Male, age 53, unknown 774.1
2769 Male, age 72, unknown 774.1
2725 Female, age 75, unknown 769.1
1954 Female, age 42, unknown 758.0
2785 Male, age 18, unknown 757.9
2823 Male, age 76, right hemisphere 747.7
Substantia nigra
nTPM: 807.2
2241 Male, age 72, unknown 836.7
1851 Male, age 51, unknown 828.4
1916 Female, age 42, unknown 820.1
2699 Male, age 18, unknown 819.7
2665 Male, age 74, both hemispheres 819.1
2409 Female, age 72, unknown 805.1
2590 Female, age 75, unknown 797.0
2583 Male, age 75, right hemisphere 793.4
1941 Male, age 53, unknown 778.6
1889 Female, age 72, unknown 773.7
Superior colliculus
nTPM: 770.8
2668 Female, age 75, unknown 790.9
2587 Male, age 74, left hemisphere 787.4
2664 Male, age 75, both hemispheres 780.0
1796 Male, age 53, unknown 774.4
1895 Male, age 76, right hemisphere 774.1
1839 Male, age 51, unknown 771.7
1913 Female, age 42, unknown 761.3
1995 Male, age 72, unknown 759.3
2261 Male, age 18, unknown 758.1
2087 Female, age 72, unknown 750.7
Ventral tegmental area
nTPM: 788.9
1915 Female, age 42, unknown 815.0
2223 Female, age 72, unknown 796.9
2021 Male, age 53, unknown 787.4
2410 Female, age 72, unknown 781.1
1942 Male, age 51, unknown 777.0
2218 Male, age 76, both hemispheres 775.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 834.9
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 834.9
Samples: 139

Max nTPM: 2105.5
Min nTPM: 457.8
Std nTPM: 242.9
Median nTPM: 792.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 2105.5
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 1610.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 1560.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 1518.7
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 1363.1
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 1352.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 1324.2
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 1246.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 1192.0
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 1186.4
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 1180.7
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 24.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 24.9
FF:10158-103A5 76 years, female 24.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 595.2
Pig sample Sample description nTPM
Midbrain
nTPM: 567.9
Samples: 4

Max nTPM: 714.7
Min nTPM: 468.1
Sample A Female 714.7
Sample B Female 607.7
Sample C Male 481.1
Sample D Male 468.1
Periaqueductal gray
nTPM: 486.1
Samples: 3

Max nTPM: 505.0
Min nTPM: 448.3
Sample B Female 505.0
Sample C Male 504.9
Sample D Male 448.3
Substantia nigra
nTPM: 584.5
Samples: 4

Max nTPM: 697.2
Min nTPM: 483.1
Sample A Female 697.2
Sample B Female 628.2
Sample C Male 529.4
Sample D Male 483.1
Superior colliculi
nTPM: 595.2
Samples: 4

Max nTPM: 677.3
Min nTPM: 537.8
Sample A Female 677.3
Sample B Female 625.1
Sample C Male 540.5
Sample D Male 537.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 463.9
Mouse sample Sample description nTPM
Midbrain
nTPM: 463.9
Samples: 4

Max nTPM: 497.0
Min nTPM: 424.3
Sample A Male 497.0
Sample B Male 458.3
Sample C Female 424.3
Sample D Female 475.8

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 17.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 17.8
69818317 Antisense, RP_050510_04_H04, Mouse strain C57BL/6J (56 days, male) 17.8

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.