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PEBP1
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Endocrine cells: Medium
Enterocytes: Medium
Enterocytes - Microvilli: Not detected
Goblet cells: Medium
Paneth cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:510.6 nTPM
HPA:510.6 nTPM
GTEx:228.4 nTPM
FANTOM5:1113.4 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA008819Antibody CAB013493Antibody CAB080063
Endocrine cells -Medium-
Enterocytes -Medium-
Enterocytes - Microvilli -Not detected-
Glandular cells Medium-High
Goblet cells -Medium-
Paneth cells -Medium-







SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 510.6
overview
Male, age 65
Small intestine sample 232
nTPM: 719.7
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 502.1
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 375.8
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 444.6

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 228.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 228.4
Samples: 187

Max nTPM: 607.8
Min nTPM: 84.9
Std nTPM: 101.0
Median nTPM: 202.4
GTEX-111YS-1426-SM-5GID8 60-69 years, male 607.8
GTEX-YFCO-1326-SM-664NV 40-49 years, male 553.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 530.0
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 514.1
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 484.1
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 468.0
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 422.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 418.7
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 415.6
GTEX-1122O-1326-SM-5H11F 60-69 years, female 408.0
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 405.3
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 402.7
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 395.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 393.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 391.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 390.1
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 383.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 382.7
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 377.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 373.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 372.8
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 372.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 367.5
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 367.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 367.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 365.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 358.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 353.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 347.5
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 347.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 342.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 341.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 340.5
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 339.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 338.2
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 324.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 322.8
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 313.4
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 312.2
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 311.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 301.4
GTEX-14PKU-1626-SM-6871C 40-49 years, female 301.2
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 295.2
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 283.6
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 280.2
GTEX-144GM-1026-SM-79OKU 20-29 years, male 280.1
GTEX-14PN3-2026-SM-68729 60-69 years, female 273.8
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 272.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 271.3
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 269.1
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 265.2
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 263.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 261.7
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 261.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 256.5
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 254.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 250.9
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 250.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 246.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 245.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 243.2
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 242.1
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 241.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 240.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 237.5
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 234.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 234.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 232.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 230.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 230.3
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 228.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 228.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 227.4
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 226.4
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 225.9
GTEX-117YX-0326-SM-5GICL 50-59 years, male 224.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 223.0
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 222.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 218.4
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 215.1
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 214.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 214.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 212.7
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 212.1
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 208.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 208.9
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 206.9
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 206.7
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 206.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 205.8
GTEX-13O61-1326-SM-5KM31 60-69 years, male 204.6
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 203.9
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 203.7
GTEX-14PK6-1626-SM-6871I 70-79 years, female 202.4
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 201.1
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 200.6
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 199.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 199.6
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 198.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 197.7
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 197.2
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 196.1
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 194.5
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 194.4
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 194.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 194.1
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 193.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 193.4
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 192.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 192.5
GTEX-1C475-1426-SM-793CH 40-49 years, female 191.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 187.6
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 187.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 185.1
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 185.0
GTEX-13111-1426-SM-5DUW3 50-59 years, male 183.5
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 182.5
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 179.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 179.5
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 179.3
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 178.3
GTEX-1192X-2526-SM-59868 50-59 years, male 178.3
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 178.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 178.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 177.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 175.8
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 175.1
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 174.1
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 174.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 170.7
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 169.7
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 169.6
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 165.6
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 164.2
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 162.4
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 161.7
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 161.5
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 158.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 157.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 152.7
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 151.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 149.2
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 148.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 144.8
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 144.6
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 144.0
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 143.2
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 143.1
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 142.5
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 139.7
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 139.5
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 139.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 137.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 136.5
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 134.9
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 133.8
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 133.6
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 133.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 133.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 133.0
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 132.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 130.9
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 130.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 128.5
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 123.5
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 121.6
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 121.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 121.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 120.7
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 119.3
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 117.9
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 116.3
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 115.6
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 115.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 112.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 110.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 109.7
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 106.0
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 104.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 102.4
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 102.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 100.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 97.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 96.5
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 93.7
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 85.7
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 84.9
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 1113.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 1113.4
FF:10024-101D6 15,40,85 years, mixed 1113.4

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