MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:62.6 nTPM
HPA:62.6 nTPM
GTEx:63.7 nTPM
FANTOM5:54.5 Scaled Tags Per Million
Pig:55.6 nTPM
Mouse:81.4 nTPM
Allen mouse:8.7 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 62.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 57.9
2219 Male, age 76, both hemispheres 61.0
1827 Male, age 72, unknown 60.5
2666 Male, age 74, left hemisphere 58.6
2019 Male, age 18, unknown 58.0
2411 Female, age 72, unknown 57.9
1833 Male, age 53, unknown 57.6
1870 Female, age 42, unknown 57.5
2828 Female, age 72, unknown 57.2
1830 Male, age 51, unknown 56.9
2586 Male, age 75, left hemisphere 53.9
Dorsal raphe nucleus
nTPM: 58.0
2298 Female, age 72, unknown 61.1
2750 Male, age 76, both hemispheres 59.2
1828 Male, age 53, unknown 58.9
2047 Male, age 72, unknown 56.7
2016 Female, age 72, unknown 54.3
Inferior colliculus
nTPM: 57.5
2849 Male, age 72, unknown 58.5
2097 Female, age 72, unknown 57.9
1890 Male, age 53, unknown 57.3
1848 Female, age 42, unknown 56.4
Median raphe nucleus
nTPM: 62.6
2220 Male, age 76, midline 62.6
Pedunculopontine tegmental nucleus
nTPM: 59.8
2334 Male, age 80, both hemispheres 61.9
2338 Male, age 61, both hemispheres 61.3
1921 Female, age 85, both hemispheres 56.1
Periaquaductal grey, anterior
nTPM: 59.2
1947 Male, age 18, unknown 61.3
1795 Male, age 51, unknown 60.9
2502 Female, age 75, unknown 55.4
Periaquaductal grey, dorsal
nTPM: 56.7
2850 Male, age 76, both hemispheres 59.1
1831 Male, age 72, unknown 56.1
1840 Male, age 53, unknown 56.1
2464 Female, age 72, unknown 55.6
Periaquaductal grey, lateral
nTPM: 56.4
2272 Male, age 74, both hemispheres 59.0
2140 Male, age 76, both hemispheres 56.0
2053 Male, age 18, unknown 54.1
Pretectal area
nTPM: 58.8
1816 Male, age 51, unknown 61.8
1817 Female, age 42, unknown 61.2
2007 Male, age 72, unknown 60.7
2667 Female, age 75, unknown 60.4
1815 Male, age 53, unknown 59.3
2224 Female, age 72, unknown 59.3
1944 Female, age 72, unknown 59.0
2825 Male, age 18, unknown 58.3
2273 Male, age 74, both hemispheres 57.9
2407 Male, age 75, both hemispheres 55.6
2316 Male, age 76, right hemisphere 53.6
Red nucleus
nTPM: 57.8
2725 Female, age 75, unknown 63.0
1821 Female, age 72, unknown 59.7
1904 Male, age 53, unknown 58.1
2503 Female, age 72, unknown 58.1
2584 Male, age 75, left hemisphere 57.9
2785 Male, age 18, unknown 57.7
1954 Female, age 42, unknown 57.3
2823 Male, age 76, right hemisphere 57.2
2227 Male, age 72, unknown 56.6
2769 Male, age 72, unknown 56.5
1865 Male, age 51, unknown 56.1
2588 Male, age 74, left hemisphere 56.1
Substantia nigra
nTPM: 61.0
1916 Female, age 42, unknown 68.9
2241 Male, age 72, unknown 63.3
1851 Male, age 51, unknown 62.7
1889 Female, age 72, unknown 60.9
2665 Male, age 74, both hemispheres 60.5
2409 Female, age 72, unknown 60.2
2699 Male, age 18, unknown 59.8
1941 Male, age 53, unknown 59.5
2590 Female, age 75, unknown 57.2
2583 Male, age 75, right hemisphere 56.9
Superior colliculus
nTPM: 56.6
2587 Male, age 74, left hemisphere 58.9
1796 Male, age 53, unknown 58.5
2087 Female, age 72, unknown 58.3
2261 Male, age 18, unknown 58.0
2668 Female, age 75, unknown 57.3
1895 Male, age 76, right hemisphere 56.8
1913 Female, age 42, unknown 56.5
1839 Male, age 51, unknown 55.4
1995 Male, age 72, unknown 53.9
2664 Male, age 75, both hemispheres 52.4
Ventral tegmental area
nTPM: 59.3
1915 Female, age 42, unknown 61.7
2410 Female, age 72, unknown 61.0
2218 Male, age 76, both hemispheres 60.6
2223 Female, age 72, unknown 58.0
2021 Male, age 53, unknown 57.5
1942 Male, age 51, unknown 57.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 63.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 63.7
Samples: 139

Max nTPM: 111.9
Min nTPM: 39.4
Std nTPM: 14.7
Median nTPM: 61.9
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 111.9
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 109.2
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 106.5
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 96.4
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 94.7
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 91.6
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 91.0
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 89.5
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 88.3
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 87.6
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 87.5
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 54.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 54.5
FF:10158-103A5 76 years, female 54.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 55.6
Pig sample Sample description nTPM
Midbrain
nTPM: 55.6
Samples: 4

Max nTPM: 89.0
Min nTPM: 39.9
Sample A Female 89.0
Sample B Female 52.6
Sample C Male 39.9
Sample D Male 40.8
Periaqueductal gray
nTPM: 43.3
Samples: 3

Max nTPM: 47.4
Min nTPM: 37.4
Sample B Female 45.1
Sample C Male 47.4
Sample D Male 37.4
Substantia nigra
nTPM: 50.7
Samples: 4

Max nTPM: 58.0
Min nTPM: 39.5
Sample A Female 58.0
Sample B Female 39.5
Sample C Male 52.2
Sample D Male 53.1
Superior colliculi
nTPM: 48.6
Samples: 4

Max nTPM: 52.5
Min nTPM: 43.0
Sample A Female 52.5
Sample B Female 43.0
Sample C Male 47.3
Sample D Male 51.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 81.4
Mouse sample Sample description nTPM
Midbrain
nTPM: 81.4
Samples: 4

Max nTPM: 85.8
Min nTPM: 76.7
Sample A Male 85.8
Sample B Male 76.7
Sample C Female 78.9
Sample D Female 84.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 8.7
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 8.7
72007751 Antisense, RP_051017_01_A12, Mouse strain C57BL/6J (56 days, male) 10.4
638718 Antisense, RP_040831_02_D06, Mouse strain C57BL/6J (56 days, male) 7.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.