BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: High
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:58.0 nTPM
HPA:58.0 nTPM
GTEx:54.7 nTPM
FANTOM5:69.4 Scaled Tags Per Million
Pig:38.9 nTPM
Mouse:112.7 nTPM
Allen mouse:9.4 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA039363Antibody HPA039456
Glial cells MediumHigh
Neuronal cells MediumHigh




BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 58.0
Sample id Sample description nTPM
Caudate nucleus
nTPM: 56.2
2481 Female, age 94, left hemisphere 60.7
2846 Female, age 79, unknown 58.3
2288 Male, age 75, left hemisphere 57.5
1781 Male, age 74, unknown 55.0
2290 Female, age 72, unknown 54.8
1854 Male, age 80, left hemisphere 54.7
1857 Female, age 85, left hemisphere 54.5
2289 Male, age 61, right hemisphere 53.8
Claustrum
nTPM: 56.9
2198 Male, age 80, both hemispheres 59.2
2568 Male, age 61, both hemispheres 58.0
2196 Female, age 79, unknown 57.4
1956 Male, age 74, unknown 56.8
2645 Female, age 72, unknown 56.8
2284 Female, age 91, both hemispheres 56.4
2292 Female, age 85, both hemispheres 56.4
2392 Female, age 94, both hemispheres 56.2
2491 Male, age 75, both hemispheres 55.1
Globus pallidus, externus
nTPM: 57.1
2395 Male, age 75, both hemispheres 60.5
2772 Female, age 79, unknown 58.6
1996 Male, age 80, right hemisphere 57.2
2567 Female, age 72, unknown 55.1
2646 Male, age 61, right hemisphere 54.3
Globus pallidus, internus
nTPM: 58.0
2287 Male, age 75, right hemisphere 62.5
2483 Female, age 94, right hemisphere 60.1
2778 Female, age 91, both hemispheres 58.0
2037 Male, age 80, right hemisphere 57.4
1818 Male, age 74, unknown 57.0
2566 Female, age 72, unknown 55.9
2111 Female, age 85, right hemisphere 54.9
Nucleus accumbens
nTPM: 56.4
2286 Male, age 75, left hemisphere 58.5
2391 Female, age 94, left hemisphere 58.2
2698 Female, age 72, unknown 57.9
1856 Female, age 91, right hemisphere 56.5
2732 Male, age 80, right hemisphere 55.6
1783 Male, age 74, unknown 55.4
1806 Female, age 85, left hemisphere 54.6
2824 Male, age 61, right hemisphere 54.4
Nucleus basalis of Meynert
nTPM: 55.9
2821 Male, age 75, both hemispheres 60.0
2484 Female, age 94, left hemisphere 55.3
2393 Male, age 80, right hemisphere 55.1
2569 Male, age 61, both hemispheres 53.0
Nucleus of the diagonal band
nTPM: 55.8
1812 Female, age 91, both hemispheres 57.6
2775 Male, age 80, right hemisphere 56.3
2195 Female, age 85, both hemispheres 56.0
1979 Male, age 74, unknown 54.9
2029 Male, age 61, right hemisphere 54.1
Olfactory tubercle
nTPM: 56.6
1998 Female, age 91, both hemispheres 58.4
2856 Male, age 75, right hemisphere 56.5
1846 Male, age 80, right hemisphere 56.2
2487 Female, age 94, left hemisphere 55.3
Putamen
nTPM: 56.0
2482 Female, age 94, left hemisphere 59.2
2466 Female, age 79, unknown 57.1
1829 Male, age 74, unknown 56.3
1838 Male, age 80, right hemisphere 56.1
1937 Female, age 91, right hemisphere 55.7
2489 Female, age 72, unknown 54.3
2647 Male, age 75, left hemisphere 53.4
Septal nuclei
nTPM: 56.3
2629 Female, age 94, right hemisphere 58.6
1960 Male, age 74, unknown 58.1
2031 Female, age 72, unknown 56.3
2199 Male, age 80, right hemisphere 56.2
2009 Female, age 91, both hemispheres 55.5
2059 Female, age 85, both hemispheres 55.1
2394 Male, age 61, left hemisphere 54.7

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 54.7
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 50.0
Samples: 246

Max nTPM: 83.4
Min nTPM: 31.9
Std nTPM: 8.8
Median nTPM: 48.6
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 83.4
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 81.9
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 77.5
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 74.8
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 71.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 70.6
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 70.4
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 69.3
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 68.8
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 68.5
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 67.4
Show allShow less
Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 54.7
Samples: 246

Max nTPM: 95.2
Min nTPM: 32.7
Std nTPM: 10.5
Median nTPM: 53.3
GTEX-13IVO-0011-R6b-SM-5K7X9 70-79 years, male 95.2
GTEX-11DYG-0011-R6a-SM-DO936 60-69 years, male 89.8
GTEX-12WSD-0011-R6b-SM-5P9JU 60-69 years, female 88.5
GTEX-11DZ1-0011-R6b-SM-DNZZG 50-59 years, male 87.8
GTEX-1IY9M-0011-R6a-SM-D4P28 60-69 years, male 86.4
GTEX-12WSH-0011-R6b-SM-5P9F4 50-59 years, male 84.7
GTEX-1LVAO-0011-R6b-SM-EZ6MX 60-69 years, male 78.9
GTEX-1AX9I-0011-R6a-SM-7P8PK 60-69 years, male 77.1
GTEX-1J8Q2-0011-R6a-SM-CKZPG 60-69 years, male 77.0
GTEX-1F75A-0011-R6b-SM-9QEHD 50-59 years, male 76.7
GTEX-13FHO-0011-R6b-SM-5LZX1 60-69 years, male 72.6
Show allShow less
Brain - Putamen (basal ganglia)
Average nTPM: 53.4
Samples: 205

Max nTPM: 90.7
Min nTPM: 26.9
Std nTPM: 9.4
Median nTPM: 52.1
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 90.7
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 79.1
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 76.6
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 74.5
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 74.3
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 73.8
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 72.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 71.3
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 71.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 70.9
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 70.6
Show allShow less

BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 69.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 59.3
FF:10164-103B2 76 years, female 59.3
Globus pallidus
Scaled Tags Per Million: 69.4
FF:10175-103C4 60 years, female 86.8
FF:10161-103A8 76 years, female 52.0
Nucleus accumbens
Scaled Tags Per Million: 62.1
FF:10037-101F1 23-56 years, mixed 62.1
Putamen
Scaled Tags Per Million: 62.8
FF:10176-103C5 60 years, female 62.8

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 38.9
Pig sample Sample description nTPM
Caudate
nTPM: 27.9
Samples: 4

Max nTPM: 31.2
Min nTPM: 24.0
Sample A Female 27.8
Sample B Female 28.4
Sample C Male 31.2
Sample D Male 24.0
Putamen
nTPM: 36.7
Samples: 4

Max nTPM: 43.5
Min nTPM: 27.2
Sample A Female 43.5
Sample B Female 27.2
Sample C Male 38.8
Sample D Male 37.4
Septum
nTPM: 38.9
Samples: 4

Max nTPM: 51.1
Min nTPM: 33.8
Sample A Female 35.5
Sample B Female 33.8
Sample C Male 51.1
Sample D Male 35.1
Ventral pallidum
nTPM: 36.7
Samples: 4

Max nTPM: 44.0
Min nTPM: 26.5
Sample A Female 26.5
Sample B Female 39.7
Sample C Male 44.0
Sample D Male 36.6

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 112.7
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 86.8
Samples: 4

Max nTPM: 94.3
Min nTPM: 77.8
Sample A Male 77.8
Sample B Male 93.3
Sample C Female 81.7
Sample D Female 94.3
Septum
nTPM: 112.7
Samples: 4

Max nTPM: 116.5
Min nTPM: 105.6
Sample A Male 112.5
Sample B Male 116.2
Sample C Female 116.5
Sample D Female 105.6
Ventral forebrain
nTPM: 93.5
Samples: 4

Max nTPM: 112.7
Min nTPM: 84.3
Sample A Male 84.3
Sample B Male 91.7
Sample C Female 112.7
Sample D Female 85.3

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 9.4
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 7.9
72007751 Antisense, RP_051017_01_A12, Mouse strain C57BL/6J (56 days, male) 9.2
638718 Antisense, RP_040831_02_D06, Mouse strain C57BL/6J (56 days, male) 6.6
Pallidum
Expression energy: 9.4
72007751 Antisense, RP_051017_01_A12, Mouse strain C57BL/6J (56 days, male) 10.7
638718 Antisense, RP_040831_02_D06, Mouse strain C57BL/6J (56 days, male) 8.0

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.