MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:141.5 nTPM
HPA:141.5 nTPM
GTEx:28.3 nTPM
FANTOM5:57.6 Scaled Tags Per Million

MIDBRAIN - Annotated protein expression
Pending normal tissue analysis

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 141.5
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 138.9
2019 Male, age 18, unknown 141.4
1870 Female, age 42, unknown 140.0
2411 Female, age 72, unknown 139.6
1827 Male, age 72, unknown 139.2
1830 Male, age 51, unknown 139.2
1833 Male, age 53, unknown 138.9
2219 Male, age 76, both hemispheres 138.9
2828 Female, age 72, unknown 138.5
2586 Male, age 75, left hemisphere 137.0
2666 Male, age 74, left hemisphere 136.5
Dorsal raphe nucleus
nTPM: 138.6
2750 Male, age 76, both hemispheres 139.6
1828 Male, age 53, unknown 139.0
2298 Female, age 72, unknown 138.6
2016 Female, age 72, unknown 138.0
2047 Male, age 72, unknown 138.0
Inferior colliculus
nTPM: 139.0
1890 Male, age 53, unknown 140.1
2097 Female, age 72, unknown 139.7
1848 Female, age 42, unknown 138.5
2849 Male, age 72, unknown 137.5
Median raphe nucleus
nTPM: 138.9
2220 Male, age 76, midline 138.9
Pedunculopontine tegmental nucleus
nTPM: 139.1
1921 Female, age 85, both hemispheres 140.7
2334 Male, age 80, both hemispheres 139.6
2338 Male, age 61, both hemispheres 137.1
Periaquaductal grey, anterior
nTPM: 139.3
1947 Male, age 18, unknown 140.6
2502 Female, age 75, unknown 139.6
1795 Male, age 51, unknown 137.8
Periaquaductal grey, dorsal
nTPM: 138.3
1840 Male, age 53, unknown 138.7
2464 Female, age 72, unknown 138.5
1831 Male, age 72, unknown 138.0
2850 Male, age 76, both hemispheres 138.0
Periaquaductal grey, lateral
nTPM: 138.3
2053 Male, age 18, unknown 139.1
2140 Male, age 76, both hemispheres 138.5
2272 Male, age 74, both hemispheres 137.3
Pretectal area
nTPM: 138.7
2667 Female, age 75, unknown 141.0
1815 Male, age 53, unknown 140.4
1817 Female, age 42, unknown 139.9
2316 Male, age 76, right hemisphere 139.3
1944 Female, age 72, unknown 138.9
1816 Male, age 51, unknown 138.8
2273 Male, age 74, both hemispheres 138.6
2007 Male, age 72, unknown 138.0
2224 Female, age 72, unknown 137.6
2825 Male, age 18, unknown 137.4
2407 Male, age 75, both hemispheres 135.4
Red nucleus
nTPM: 140.3
1821 Female, age 72, unknown 141.7
1865 Male, age 51, unknown 141.5
1904 Male, age 53, unknown 141.5
2227 Male, age 72, unknown 141.4
2503 Female, age 72, unknown 141.3
2823 Male, age 76, right hemisphere 141.3
1954 Female, age 42, unknown 141.0
2769 Male, age 72, unknown 140.4
2725 Female, age 75, unknown 139.4
2785 Male, age 18, unknown 139.3
2588 Male, age 74, left hemisphere 138.5
2584 Male, age 75, left hemisphere 136.5
Substantia nigra
nTPM: 141.5
2409 Female, age 72, unknown 164.6
2241 Male, age 72, unknown 140.9
1851 Male, age 51, unknown 140.1
1889 Female, age 72, unknown 139.7
2590 Female, age 75, unknown 139.0
2699 Male, age 18, unknown 139.0
1916 Female, age 42, unknown 138.5
1941 Male, age 53, unknown 138.2
2665 Male, age 74, both hemispheres 137.9
2583 Male, age 75, right hemisphere 137.4
Superior colliculus
nTPM: 138.8
1895 Male, age 76, right hemisphere 142.0
1913 Female, age 42, unknown 141.6
1995 Male, age 72, unknown 139.8
2087 Female, age 72, unknown 138.8
1839 Male, age 51, unknown 138.7
2668 Female, age 75, unknown 138.1
2587 Male, age 74, left hemisphere 138.0
2261 Male, age 18, unknown 137.7
1796 Male, age 53, unknown 137.5
2664 Male, age 75, both hemispheres 135.8
Ventral tegmental area
nTPM: 139.6
2410 Female, age 72, unknown 141.9
2223 Female, age 72, unknown 139.7
1942 Male, age 51, unknown 139.6
1915 Female, age 42, unknown 139.1
2218 Male, age 76, both hemispheres 139.1
2021 Male, age 53, unknown 138.1

MIDBRAIN - GTEx RNA-seqi
Average nTPM 28.3
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 28.3
Samples: 139

Max nTPM: 48.7
Min nTPM: 17.2
Std nTPM: 6.3
Median nTPM: 27.2
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 48.7
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 47.9
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 44.3
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 42.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 42.3
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 40.5
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 40.3
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 39.2
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 38.7
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 37.5
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 36.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 57.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 57.6
FF:10158-103A5 76 years, female 57.6

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The Human Protein Atlas

The Human Protein Atlas project is funded
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