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FXYD3
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Endocrine cells: Medium
Enterocytes: Low
Enterocytes - Microvilli: Not detected
Goblet cells: Medium
Paneth cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:308.9 nTPM
HPA:108.3 nTPM
GTEx:308.9 nTPM
FANTOM5:97.7 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA010856
Endocrine cells Medium
Enterocytes Low
Enterocytes - Microvilli Not detected
Goblet cells Medium
Paneth cells Medium


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 108.3
overview
Male, age 65
Small intestine sample 232
nTPM: 64.6
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 225
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 74.4
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 69.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 308.9
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 308.9
Samples: 187

Max nTPM: 2047.7
Min nTPM: 4.0
Std nTPM: 397.3
Median nTPM: 144.7
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 2047.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 1945.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1756.6
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 1379.8
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 1369.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 1267.8
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 1267.6
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 1214.2
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 1167.1
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 1134.3
GTEX-14PN3-2026-SM-68729 60-69 years, female 1109.4
GTEX-1122O-1326-SM-5H11F 60-69 years, female 1103.3
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 1100.8
GTEX-ZTSS-0926-SM-59865 40-49 years, male 1037.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 956.3
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 940.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 906.0
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 889.5
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 857.5
GTEX-YFCO-1326-SM-664NV 40-49 years, male 841.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 841.8
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 835.1
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 832.1
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 808.3
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 806.7
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 797.0
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 733.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 719.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 715.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 714.4
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 700.7
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 691.8
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 679.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 645.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 627.6
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 617.4
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 546.0
GTEX-14PKU-1626-SM-6871C 40-49 years, female 512.9
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 512.5
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 509.6
GTEX-13113-1226-SM-5EGHT 60-69 years, female 502.2
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 484.0
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 479.8
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 478.1
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 472.7
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 466.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 466.6
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 446.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 445.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 423.2
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 422.8
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 412.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 397.8
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 392.1
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 387.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 385.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 382.3
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 366.4
GTEX-1C475-1426-SM-793CH 40-49 years, female 352.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 345.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 337.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 335.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 325.8
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 313.6
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 313.6
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 305.0
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 296.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 278.9
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 270.8
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 265.5
GTEX-14PK6-1626-SM-6871I 70-79 years, female 257.7
GTEX-13O61-1326-SM-5KM31 60-69 years, male 254.5
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 252.5
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 250.3
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 228.0
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 226.6
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 221.8
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 213.0
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 211.3
GTEX-144GM-1026-SM-79OKU 20-29 years, male 206.6
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 205.7
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 200.7
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 200.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 173.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 171.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 164.9
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 160.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 160.3
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 156.3
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 153.9
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 152.1
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 146.5
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 145.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 144.7
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 137.7
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 137.2
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 127.0
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 122.6
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 116.0
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 115.9
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 113.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 103.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 101.4
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 93.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 91.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 88.5
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 87.3
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 87.0
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 80.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 64.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 61.2
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 60.3
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 57.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 53.5
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 53.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 52.1
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 51.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 48.8
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 47.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 46.6
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 45.2
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 43.3
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 41.0
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 40.3
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 36.7
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 36.2
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 35.9
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 35.6
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 34.8
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 34.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 33.6
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 30.4
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 27.3
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 27.2
GTEX-117YX-0326-SM-5GICL 50-59 years, male 23.4
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 23.4
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 22.3
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 21.5
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 21.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 21.3
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 20.8
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 20.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 19.0
GTEX-1192X-2526-SM-59868 50-59 years, male 18.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 18.8
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 18.2
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 18.2
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 17.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 17.3
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 17.0
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 16.9
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 16.9
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 16.8
GTEX-13111-1426-SM-5DUW3 50-59 years, male 16.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 16.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 16.6
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 16.6
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 16.5
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 16.0
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 15.6
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 15.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 14.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 12.7
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 12.1
GTEX-183FY-1626-SM-793D8 20-29 years, male 11.9
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 11.7
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 11.2
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 11.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 10.3
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 9.9
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 9.8
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 9.1
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 8.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 7.2
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 6.9
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 6.8
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 6.7
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 6.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 6.6
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 6.4
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 5.2
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 5.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 4.7
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 4.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 4.5
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 4.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 4.0
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 97.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 97.7
FF:10024-101D6 15,40,85 years, mixed 97.7

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