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NECAP1
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TISSUE PRIMARY DATA CAUDATE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Caudate
Tissue proteome
CAUDATE - Expression summary
Protein expression
Caudatei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
GTEx:25.4 nTPM
FANTOM5:114.4 Scaled Tags Per Million
Pig:61.3 nTPM

CAUDATE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA063300
Glial cells Not detected
Neuronal cells Not detected

CAUDATE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 25.4
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 25.4
Samples: 246

Max nTPM: 89.5
Min nTPM: 3.0
Std nTPM: 14.1
Median nTPM: 21.5
GTEX-RNOR-0011-R5A-SM-2TF4J 50-59 years, female 89.5
GTEX-T2IS-0011-R5A-SM-32QP4 20-29 years, female 78.3
GTEX-14JIY-0011-R5b-SM-62LE7 60-69 years, male 70.2
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 65.6
GTEX-1EMGI-0011-R5a-SM-CJI2E 60-69 years, male 62.6
GTEX-Q2AG-0011-R5A-SM-2HMJH 40-49 years, female 58.1
GTEX-139TT-0011-R5b-SM-5K7W8 60-69 years, male 57.9
GTEX-16YQH-0011-R5b-SM-7938U 30-39 years, male 56.2
GTEX-1AX9I-0011-R5b-SM-793DI 60-69 years, male 55.7
GTEX-131YS-0011-R5b-SM-5K7YB 60-69 years, female 55.4
GTEX-15ER7-0011-R5b-SM-6M46T 20-29 years, female 54.2
GTEX-1GN73-0011-R5a-SM-9QEIM 60-69 years, male 54.2
GTEX-T6MN-0011-R5A-SM-32QPD 50-59 years, male 53.3
GTEX-15CHQ-0011-R5b-SM-6AJAN 60-69 years, male 52.2
GTEX-11OF3-0011-R5a-SM-57WB4 60-69 years, male 52.1
GTEX-14PN4-0011-R5a-SM-686ZV 50-59 years, male 51.3
GTEX-1313W-0011-R5b-SM-5L3EP 50-59 years, female 51.2
GTEX-1IY9M-0011-R5a-SM-A9SLX 60-69 years, male 50.6
GTEX-11PRG-0011-R5b-SM-DNZZS 50-59 years, male 49.2
GTEX-12WSC-0011-R5b-SM-5CVNS 50-59 years, male 49.1
GTEX-1LG7Y-0011-R5a-SM-EZ6MU 50-59 years, male 49.0
GTEX-13G51-0011-R5a-SM-5L3EB 60-69 years, male 48.1
GTEX-11DYG-0011-R5a-SM-DO928 60-69 years, male 47.3
GTEX-S7SE-0011-R5A-SM-2XCDA 50-59 years, male 47.1
GTEX-1J1OQ-0011-R5a-SM-D3L8K 40-49 years, female 46.9
GTEX-12ZZY-0011-R5a-SM-5EGL9 60-69 years, male 46.8
GTEX-145MH-0011-R5a-SM-5P9JT 50-59 years, male 46.2
GTEX-1HB9E-0011-R5b-SM-ARU78 50-59 years, male 45.3
GTEX-1F6IF-0011-R5b-SM-CM2RH 60-69 years, male 44.4
GTEX-1B8L1-0011-R5a-SM-7DHN5 60-69 years, male 44.0
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 43.0
GTEX-1F7RK-0011-R5b-SM-9WG5S 20-29 years, female 42.9
GTEX-13X6J-0011-R5b-SM-5PNWT 50-59 years, male 42.6
GTEX-1F75A-0011-R5a-SM-ARZMJ 50-59 years, male 41.9
GTEX-1JMQJ-0011-R5a-SM-EYYXO 50-59 years, male 41.9
GTEX-13O3Q-0011-R5b-SM-5P9H4 50-59 years, male 41.4
GTEX-T5JC-0011-R5A-SM-32PLK 20-29 years, male 40.7
GTEX-QVJO-0011-R5A-SM-2S1QM 60-69 years, female 39.8
GTEX-17EVP-0011-R5b-SM-7DHKW 40-49 years, male 39.4
GTEX-18464-0011-R5b-SM-718A6 50-59 years, male 38.4
GTEX-14ABY-0011-R5b-SM-5SI7B 50-59 years, male 38.2
GTEX-WL46-0011-R5A-SM-3LK6V 50-59 years, male 37.8
GTEX-14JG1-0011-R5a-SM-62LED 40-49 years, male 37.6
GTEX-WVLH-0011-R5A-SM-3MJFW 50-59 years, male 37.4
GTEX-PVOW-0011-R5A-SM-32PL7 40-49 years, male 37.0
GTEX-1R9K4-0011-R5b-SM-EZ6N8 60-69 years, male 36.0
GTEX-N7MT-0011-R5a-SM-2I3G6 60-69 years, female 35.9
GTEX-15EO6-0011-R5b-SM-7KUDZ 50-59 years, male 35.8
GTEX-WZTO-0011-R5B-SM-3NMC5 40-49 years, male 35.3
GTEX-ZUA1-0011-R5b-SM-51MTG 40-49 years, male 34.5
GTEX-1B933-0011-R5b-SM-7P8SA 50-59 years, female 34.1
GTEX-1399T-0011-R5b-SM-5IJDK 60-69 years, male 34.0
GTEX-P44H-0011-R5A-SM-2XCEX 40-49 years, male 33.7
GTEX-1EX96-0011-R5a-SM-ARU83 50-59 years, male 33.6
GTEX-13VXU-0011-R5a-SM-5O9D7 50-59 years, male 33.1
GTEX-11H98-0011-R5b-SM-57WCF 50-59 years, male 33.0
GTEX-145LS-0011-R5a-SM-5SI65 60-69 years, female 32.7
GTEX-11DXY-0011-R5b-SM-DNZZL 60-69 years, male 32.5
GTEX-14BIM-0011-R5b-SM-5S2RM 60-69 years, female 32.4
GTEX-12WSM-0011-R5a-SM-5EQ4Y 60-69 years, male 31.8
GTEX-N7MS-0011-R5a-SM-2HMK8 60-69 years, male 31.8
GTEX-13SLX-0011-R5a-SM-5O9BV 50-59 years, female 31.6
GTEX-1HGF4-0011-R5b-SM-CM2ST 60-69 years, male 31.4
GTEX-1HFI6-0011-R5a-SM-A9G1J 40-49 years, male 31.3
GTEX-15SHU-0011-R5a-SM-7938Q 40-49 years, female 31.0
GTEX-1C6WA-0011-R5a-SM-9WG5X 60-69 years, male 30.9
GTEX-11NV4-0011-R5a-SM-5NQ88 60-69 years, male 30.7
GTEX-13S7M-0011-R5b-SM-5P9HS 60-69 years, female 30.5
GTEX-13FHO-0011-R5b-SM-5LZZ3 60-69 years, male 30.4
GTEX-15DYW-0011-R5a-SM-6M46W 60-69 years, female 29.8
GTEX-RU72-0011-R5A-SM-2TF6U 50-59 years, female 29.8
GTEX-1IKJJ-0011-R5b-SM-CE6SL 60-69 years, male 29.7
GTEX-1JMPZ-0011-R5b-SM-EYYWY 30-39 years, male 29.7
GTEX-13RTJ-0011-R5a-SM-5P9HR 60-69 years, male 29.2
GTEX-WWYW-0011-R5A-SM-3NB3E 50-59 years, female 29.1
GTEX-1192X-0011-R5a-SM-DNZZA 50-59 years, male 29.1
GTEX-Y8DK-0011-R5B-SM-4RTW6 60-69 years, male 29.0
GTEX-12ZZZ-0011-R5a-SM-5EQ4M 60-69 years, male 28.8
GTEX-1GZ2Q-0011-R5a-SM-A96RQ 40-49 years, male 28.3
GTEX-1R9PO-0011-R5a-SM-EZ6NA 60-69 years, female 28.2
GTEX-P44G-0011-R5A-SM-2I3FA 30-39 years, male 28.0
GTEX-1GTWX-0011-R5b-SM-CKZO6 60-69 years, male 27.9
GTEX-17HG3-0011-R5a-SM-7DUEW 30-39 years, female 27.6
GTEX-11GSP-0011-R5a-SM-57WBE 60-69 years, female 27.4
GTEX-13O3O-0011-R5b-SM-5KM44 60-69 years, female 27.4
GTEX-13OVL-0011-R5b-SM-5L3FU 50-59 years, male 27.4
GTEX-1IDJH-0011-R5a-SM-CE6SR 70-79 years, male 27.4
GTEX-ZE9C-0011-R5a-SM-5EGLO 60-69 years, male 27.2
GTEX-1HBPI-0011-R5a-SM-CKZOW 50-59 years, male 27.2
GTEX-1I1GQ-0011-R5a-SM-CMKHJ 50-59 years, male 27.2
GTEX-1B8SF-0011-R5a-SM-79OOO 60-69 years, male 27.1
GTEX-1H1DG-0011-R5b-SM-CJI33 70-79 years, male 27.1
GTEX-14BMV-0011-R5b-SM-62LFT 50-59 years, male 26.6
GTEX-R55E-0011-R5A-SM-2TC5N 20-29 years, male 26.6
GTEX-X585-0011-R5A-SM-46MVI 50-59 years, male 26.6
GTEX-1N2DW-0011-R5a-SM-EYYX3 50-59 years, male 26.6
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 26.5
GTEX-15DCD-0011-R5a-SM-CXZKZ 70-79 years, female 26.3
GTEX-1H1ZS-0011-R5b-SM-CL53L 70-79 years, male 26.2
GTEX-1A3MX-0011-R5a-SM-79OM5 60-69 years, male 25.2
GTEX-13FXS-0011-R5b-SM-5LZYE 50-59 years, male 25.0
GTEX-1H3NZ-0011-R5a-SM-CM2SP 60-69 years, male 24.8
GTEX-13OW6-0011-R5a-SM-5O9BK 50-59 years, male 24.7
GTEX-1HCVE-0011-R5b-SM-CKZP7 50-59 years, male 24.2
GTEX-1I1GS-0011-R5a-SM-CKZPC 60-69 years, male 24.2
GTEX-1F75W-0011-R5b-SM-9QEGV 60-69 years, male 24.1
GTEX-11NUK-0011-R5a-SM-DO93N 50-59 years, male 23.9
GTEX-1HT8W-0011-R5b-SM-CJI3P 30-39 years, male 23.9
GTEX-13N1W-0011-R5b-SM-5MR5Q 70-79 years, male 23.6
GTEX-13X6K-0011-R5b-SM-5PNUE 60-69 years, female 23.5
GTEX-1GMR8-0011-R5b-SM-9QEIH 50-59 years, female 23.4
GTEX-13OW7-0011-R5b-SM-5O9DM 50-59 years, male 23.3
GTEX-17F97-0011-R5a-SM-7LG4Z 50-59 years, male 22.9
GTEX-11ONC-0011-R5b-SM-DO93I 60-69 years, male 22.8
GTEX-13FLW-0011-R5a-SM-5LZX6 50-59 years, male 22.7
GTEX-12WSD-0011-R5b-SM-5CVNG 60-69 years, female 22.5
GTEX-1GF9W-0011-R5a-SM-CKZO4 60-69 years, male 22.5
GTEX-1I1GR-0011-R5a-SM-CMKHD 60-69 years, male 22.5
GTEX-13JUV-0011-R5a-SM-5LZY5 40-49 years, female 22.0
GTEX-1J8Q2-0011-R5b-SM-A9SKH 60-69 years, male 22.0
GTEX-11TTK-0011-R5a-SM-DNZZV 60-69 years, female 21.8
GTEX-1GZ4I-0011-R5a-SM-9OSWQ 50-59 years, male 21.6
GTEX-13X6I-0011-R5a-SM-5PNWW 60-69 years, male 21.5
GTEX-NL3H-0011-R5a-SM-2I3GB 60-69 years, male 21.5
GTEX-12ZZX-0011-R5a-SM-5HL89 40-49 years, female 21.4
GTEX-1H1CY-0011-R5a-SM-CM2SN 60-69 years, female 21.4
GTEX-13OVH-0011-R5b-SM-5KM4L 70-79 years, male 21.3
GTEX-13JVG-0011-R5a-SM-5MR4O 60-69 years, male 21.1
GTEX-13NYB-0011-R5a-SM-5MR45 40-49 years, male 21.0
GTEX-14LLW-0011-R5b-SM-5ZZU6 70-79 years, female 20.6
GTEX-17HII-0011-R5a-SM-7LG51 50-59 years, male 20.6
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 20.5
GTEX-QMR6-0011-R5A-SM-32PKT 50-59 years, male 20.4
GTEX-13CZV-0011-R5a-SM-5K7XA 60-69 years, male 20.3
GTEX-14DAQ-0011-R5b-SM-5YYAK 60-69 years, female 20.3
GTEX-14E6D-0011-R5b-SM-69LQR 50-59 years, male 20.1
GTEX-1HSKV-0011-R5b-SM-ARZLN 60-69 years, male 20.1
GTEX-13NYS-0011-R5a-SM-5MR4D 60-69 years, male 20.0
GTEX-1GN1U-0011-R5a-SM-9QEIS 50-59 years, female 19.8
GTEX-ZXG5-0011-R5b-SM-57WBN 60-69 years, male 19.6
GTEX-13FLV-0011-R5a-SM-5LZWT 50-59 years, male 19.4
GTEX-1CB4G-0011-R5a-SM-CKZNM 60-69 years, male 19.2
GTEX-1CB4H-0011-R5b-SM-9QEGN 60-69 years, female 19.2
GTEX-12WSF-0011-R5a-SM-5HL8K 70-79 years, male 19.1
GTEX-13OVJ-0011-R5a-SM-5P9H7 50-59 years, female 19.1
GTEX-1F6I4-0011-R5b-SM-9QEHA 60-69 years, male 18.9
GTEX-1I1GV-0011-R5b-SM-CKZPD 60-69 years, male 18.9
GTEX-NL4W-0011-R5a-SM-2I3GD 50-59 years, male 18.8
GTEX-13OW5-0011-R5b-SM-5L3FR 60-69 years, male 18.7
GTEX-15G19-0011-R5b-SM-6M46P 60-69 years, male 18.7
GTEX-132Q8-0011-R5a-SM-5IJDM 60-69 years, male 18.6
GTEX-13OW8-0011-R5b-SM-5L3FQ 60-69 years, male 18.6
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 18.5
GTEX-1I19N-0011-R5b-SM-ARU6X 70-79 years, male 18.3
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 18.1
GTEX-1IGQW-0011-R5b-SM-CJI44 60-69 years, male 18.1
GTEX-1HR98-0011-R5a-SM-A9G1V 60-69 years, male 18.0
GTEX-14BIN-0011-R5b-SM-5SI78 50-59 years, female 17.9
GTEX-11DZ1-0011-R5a-SM-DO11J 50-59 years, male 17.7
GTEX-QDT8-0011-R5A-SM-32PKN 30-39 years, female 17.6
GTEX-13CIG-0011-R5b-SM-5L3F2 50-59 years, male 17.5
GTEX-NPJ8-0011-R5a-SM-2HMJY 40-49 years, male 17.5
GTEX-1GF9V-0011-R5a-SM-9QEI8 60-69 years, male 17.1
GTEX-12WSH-0011-R5b-SM-5P9F3 50-59 years, male 16.9
GTEX-1445S-0011-R5a-SM-5PNUS 60-69 years, male 16.9
GTEX-1IKOH-0011-R5a-SM-ARU8C 60-69 years, female 16.9
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 16.8
GTEX-14LZ3-0011-R5b-SM-5ZZV8 60-69 years, female 16.8
GTEX-TSE9-0011-R5A-SM-3DB7J 60-69 years, female 16.8
GTEX-14PJO-0011-R5a-SM-6AJBZ 60-69 years, male 16.7
GTEX-PWO3-0011-R5A-SM-2I5EZ 60-69 years, female 16.6
GTEX-RVPV-0011-R5A-SM-2TF69 60-69 years, male 16.6
GTEX-ZE7O-0011-R5a-SM-57WBO 50-59 years, female 16.6
GTEX-ZVZQ-0011-R5b-SM-57WDC 60-69 years, female 16.5
GTEX-1H3O1-0011-R5b-SM-ADEH8 60-69 years, male 16.5
GTEX-13SLW-0011-R5b-SM-5SI6Z 70-79 years, male 16.4
GTEX-1IKK5-0011-R5b-SM-CL55B 60-69 years, male 16.4
GTEX-144GL-0011-R5b-SM-5PNUJ 50-59 years, male 15.7
GTEX-ZVT3-0011-R5a-SM-51MSI 60-69 years, female 15.7
GTEX-1EKGG-0011-R5a-SM-9OSVQ 60-69 years, male 15.6
GTEX-XMD1-0011-R5A-SM-4AT47 60-69 years, male 15.5
GTEX-1B996-0011-R5a-SM-7P8PN 60-69 years, male 15.5
GTEX-13112-0011-R5b-SM-5DUV8 50-59 years, male 15.4
GTEX-1H3VE-0011-R5a-SM-CKZOU 40-49 years, male 15.3
GTEX-11O72-0011-R5a-SM-DO922 40-49 years, male 15.2
GTEX-12ZZW-0011-R5a-SM-5DUVN 50-59 years, male 15.1
GTEX-18465-0011-R5a-SM-72D5J 50-59 years, male 15.1
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 15.0
GTEX-1A8G6-0011-R5b-SM-7IGQG 60-69 years, male 14.6
GTEX-1GMRU-0011-R5a-SM-CKZNS 50-59 years, male 14.5
GTEX-16Z82-0011-R5a-SM-7EPGB 60-69 years, male 14.4
GTEX-1E2YA-0011-R5a-SM-9QEGT 50-59 years, male 14.4
GTEX-13PVQ-0011-R5b-SM-5O9DI 50-59 years, male 14.3
GTEX-1HCU6-0011-R5a-SM-ARU76 60-69 years, female 14.2
GTEX-12WSA-0011-R5b-SM-5GU5I 60-69 years, male 14.1
GTEX-X261-0011-R5A-SM-3NMB4 50-59 years, male 14.1
GTEX-1I1HK-0011-R5b-SM-ARU6S 60-69 years, male 14.1
GTEX-1477Z-0011-R5b-SM-5PNUO 60-69 years, male 14.0
GTEX-X4XX-0011-R5A-SM-46MWN 60-69 years, male 13.9
GTEX-1H23P-0011-R5a-SM-CKZOI 60-69 years, male 13.9
GTEX-1HR9M-0011-R5a-SM-ARU72 60-69 years, male 13.9
GTEX-144GO-0011-R5a-SM-5PNUR 60-69 years, male 13.7
GTEX-14C39-0011-R5b-SM-5ZZV1 40-49 years, male 13.7
GTEX-1F52S-0011-R5a-SM-CJI22 60-69 years, female 13.7
GTEX-1F75B-0011-R5a-SM-9QEHC 50-59 years, male 13.6
GTEX-1HUB1-0011-R5a-SM-CKZOY 60-69 years, male 13.6
GTEX-139TS-0011-R5b-SM-5J2MZ 60-69 years, male 13.4
GTEX-ZF28-0011-R5a-SM-4WWCZ 60-69 years, male 13.4
GTEX-14ASI-0011-R5b-SM-6EU2M 60-69 years, male 12.9
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 12.8
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 12.3
GTEX-1H2FU-0011-R5b-SM-CL552 60-69 years, female 12.2
GTEX-OXRN-0011-R5A-SM-2I5EF 50-59 years, male 12.1
GTEX-1C6VS-0011-R5a-SM-7MXU9 60-69 years, male 12.1
GTEX-11DXW-0011-R5b-SM-DO11D 40-49 years, male 12.0
GTEX-1J8EW-0011-R5b-SM-ARU8B 60-69 years, female 11.8
GTEX-11UD1-0011-R5b-SM-5P9FP 40-49 years, female 11.7
GTEX-NPJ7-0011-R5a-SM-33HBK 60-69 years, female 11.7
GTEX-13PLJ-0011-R5a-SM-5O9BG 60-69 years, female 11.6
GTEX-1J8JJ-0011-R5a-SM-D4P2G 60-69 years, female 11.5
GTEX-S7PM-0011-R5A-SM-3NM8G 60-69 years, male 11.4
GTEX-1C6VR-0011-R5a-SM-9QEH1 60-69 years, male 11.1
GTEX-14753-0011-R5a-SM-5S2VW 60-69 years, male 10.9
GTEX-17HHY-0011-R5b-SM-79OMZ 50-59 years, male 10.8
GTEX-1HBPH-0011-R5b-SM-A9G1R 40-49 years, female 10.6
GTEX-1GPI6-0011-R5a-SM-CJI2W 60-69 years, male 10.5
GTEX-1EN7A-0011-R5a-SM-9QEH6 40-49 years, male 10.4
GTEX-1IL2V-0011-R5a-SM-ARL78 70-79 years, male 10.4
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 10.0
GTEX-13FHP-0011-R5b-SM-5LZY2 50-59 years, male 9.7
GTEX-145MG-0011-R5b-SM-5S2VU 50-59 years, male 9.7
GTEX-13PL6-0011-R5b-SM-5O9BI 40-49 years, female 9.6
GTEX-13CF2-0011-R5a-SM-5LZWS 60-69 years, male 9.5
GTEX-1CAV2-0011-R5b-SM-9QEH4 40-49 years, female 9.3
GTEX-1E1VI-0011-R5b-SM-9WG5V 50-59 years, male 9.1
GTEX-16NPV-0011-R5a-SM-7EPGK 50-59 years, female 8.9
GTEX-17EVQ-0011-R5a-SM-7LT92 70-79 years, male 8.8
GTEX-139TU-0011-R5b-SM-5L3E1 60-69 years, male 8.6
GTEX-183WM-0011-R5a-SM-718A4 70-79 years, female 8.1
GTEX-1IL2U-0011-R5a-SM-CE6SN 60-69 years, male 8.1
GTEX-1RNSC-0011-R5a-SM-EZ6N5 60-69 years, male 7.6
GTEX-17MF6-0011-R5a-SM-731BA 40-49 years, male 7.1
GTEX-1GN2E-0011-R5b-SM-CJI2M 60-69 years, male 6.0
GTEX-OXRO-0011-R5A-SM-2I5EG 60-69 years, female 5.6
GTEX-1EH9U-0011-R5a-SM-CJI2K 60-69 years, male 5.3
GTEX-139T8-0011-R5b-SM-5J1MO 60-69 years, male 3.0
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CAUDATE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 114.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 114.4
FF:10164-103B2 76 years, female 114.4

CAUDATE - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 61.3
Pig sample Sample description nTPM
Caudate
nTPM: 61.3
Samples: 4

Max nTPM: 70.1
Min nTPM: 54.4
Sample A Female 57.8
Sample B Female 62.9
Sample C Male 70.1
Sample D Male 54.4

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