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LTBP4
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM EPIDIDYMIS
ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA OVARY
PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE SOFT TISSUE
SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Medium
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:135.4 nTPM
HPA:87.7 nTPM
GTEx:135.4 nTPM
FANTOM5:166.4 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody CAB015194
Glandular cells Medium


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 87.7
overview
Male, age 65
Small intestine sample 232
nTPM: 74.3
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 80.7
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 90.7
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 105

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 135.4
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 135.4
Samples: 187

Max nTPM: 708.5
Min nTPM: 37.9
Std nTPM: 75.9
Median nTPM: 115.4
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 708.5
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 450.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 354.8
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 332.8
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 304.4
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 301.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 294.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 277.8
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 276.3
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 274.7
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 272.2
GTEX-13111-1426-SM-5DUW3 50-59 years, male 266.8
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 251.8
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 245.2
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 240.6
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 234.4
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 224.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 220.1
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 219.5
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 218.3
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 203.7
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 202.3
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 200.1
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 190.9
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 190.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 190.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 187.4
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 187.2
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 186.0
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 183.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 183.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 182.7
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 179.7
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 178.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 176.8
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 175.9
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 175.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 172.7
GTEX-117YX-0326-SM-5GICL 50-59 years, male 171.6
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 171.2
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 168.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 167.2
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 162.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 161.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 161.8
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 159.0
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 158.1
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 157.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 156.9
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 156.0
GTEX-1192X-2526-SM-59868 50-59 years, male 155.6
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 155.6
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 155.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 155.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 154.6
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 154.2
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 153.6
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 152.9
GTEX-ZTSS-0926-SM-59865 40-49 years, male 149.1
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 148.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 148.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 147.8
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 146.5
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 145.0
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 144.9
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 141.2
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 141.1
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 139.2
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 138.7
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 138.5
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 136.9
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 136.6
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 136.1
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 135.3
GTEX-1C475-1426-SM-793CH 40-49 years, female 132.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 131.6
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 131.3
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 127.5
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 127.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 126.6
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 125.7
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 124.3
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 123.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 122.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 122.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 122.5
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 121.6
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 121.6
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 121.5
GTEX-144GM-1026-SM-79OKU 20-29 years, male 119.6
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 116.9
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 115.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 115.6
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 115.4
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 115.2
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 114.8
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 112.7
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 112.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 112.0
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 111.5
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 110.4
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 110.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 109.4
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 108.4
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 106.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 105.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 104.3
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 103.8
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 103.6
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 103.0
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 102.9
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 102.9
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 101.9
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 101.6
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 101.4
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 100.9
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 100.6
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 100.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 99.7
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 99.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 99.2
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 99.1
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 98.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 98.0
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 97.8
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 97.8
GTEX-1122O-1326-SM-5H11F 60-69 years, female 97.3
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 96.7
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 96.5
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 96.2
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 96.1
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 95.9
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 95.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 95.1
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 94.9
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 94.0
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 93.5
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 93.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 92.2
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 90.9
GTEX-111YS-1426-SM-5GID8 60-69 years, male 90.2
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 90.0
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 89.8
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 87.3
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 86.2
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 86.1
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 85.6
GTEX-YFCO-1326-SM-664NV 40-49 years, male 84.9
GTEX-14PK6-1626-SM-6871I 70-79 years, female 84.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 83.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 82.9
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 82.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 81.9
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 81.3
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 80.6
GTEX-14PN3-2026-SM-68729 60-69 years, female 80.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 80.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 79.3
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 79.3
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 78.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 77.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 76.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 75.8
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 73.7
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 73.1
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 73.0
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 72.3
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 71.2
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 69.4
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 69.2
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 69.0
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 67.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 66.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 66.4
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 65.5
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 64.5
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 64.1
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 62.6
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 60.6
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 58.1
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 57.6
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 54.8
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 54.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 49.6
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 48.9
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 45.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 37.9
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 166.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 166.4
FF:10024-101D6 15,40,85 years, mixed 166.4

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