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BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:62.7 nTPM
HPA:62.7 nTPM
GTEx:50.6 nTPM
FANTOM5:214.1 Scaled Tags Per Million
Pig:53.1 nTPM
Mouse:40.2 nTPM

AMYGDALA - HPA Brain RNA-seq
Max nTPM 62.7
Sample id Sample description nTPM
Amygdala
nTPM: 62.7
2814 Male, age 76, right hemisphere 65.2
2514 Male, age 75, right hemisphere 64.3
2695 Female, age 67, right hemisphere 62.6
2517 Female, age 94, left hemisphere 60.9
1987 Female, age 91, left hemisphere 60.4
Basal amygdala
nTPM: 55.9
1955 Male, age 76, both hemispheres 60.4
2110 Male, age 80, left hemisphere 58.4
2609 Male, age 75, right hemisphere 57.5
2685 Female, age 94, left hemisphere 54.1
2243 Female, age 91, right hemisphere 53.1
2827 Female, age 67, right hemisphere 51.9
Central amygdala
nTPM: 57.8
1905 Male, age 76, both hemispheres 62.8
2239 Male, age 80, left hemisphere 58.6
2701 Female, age 91, right hemisphere 57.3
2515 Male, age 75, right hemisphere 56.8
2826 Female, age 94, left hemisphere 53.6
Corticomedial amygdala
nTPM: 57.9
2240 Male, age 76, both hemispheres 61.7
2428 Male, age 75, right hemisphere 60.6
2429 Female, age 94, left hemisphere 59.0
2829 Male, age 80, left hemisphere 58.3
2242 Female, age 91, right hemisphere 54.6
2535 Female, age 67, right hemisphere 53.4
Lateral amygdala
nTPM: 56.8
2516 Male, age 75, right hemisphere 62.3
1883 Male, age 76, both hemispheres 61.7
2830 Female, age 67, right hemisphere 56.2
2256 Male, age 80, left hemisphere 54.7
2534 Female, age 94, left hemisphere 53.4
2255 Female, age 91, right hemisphere 52.2
Stria terminalis, bed nucleus
nTPM: 56.5
2201 Male, age 74, unknown 57.8
1974 Female, age 91, both hemispheres 57.5
2486 Female, age 94, both hemispheres 54.1

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 50.6
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 50.6
Samples: 152

Max nTPM: 113.4
Min nTPM: 33.2
Std nTPM: 11.3
Median nTPM: 48.0
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 113.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 98.6
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 92.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 88.8
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 86.9
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 82.2
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 72.5
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 71.5
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 69.1
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 67.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 66.8
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 66.3
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 62.1
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 59.4
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 58.9
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 58.7
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 58.2
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 58.1
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 57.7
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 57.6
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 57.3
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 57.2
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 57.1
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 56.5
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 56.5
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 56.2
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 56.1
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 56.0
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 56.0
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 55.7
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 55.7
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 55.6
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 55.5
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 55.3
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 55.3
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 54.9
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 54.6
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 53.9
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 53.5
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 53.3
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 53.2
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 52.9
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 52.6
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 52.4
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 52.1
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 52.1
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 51.9
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 51.9
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 51.8
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 51.8
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 51.4
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 51.1
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 51.0
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 51.0
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 50.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 50.7
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 50.4
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 50.4
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 50.4
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 50.2
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 49.9
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 49.9
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 49.9
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 49.8
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 49.4
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 49.3
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 49.2
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 49.1
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 48.9
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 48.9
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 48.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 48.5
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 48.4
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 48.2
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 48.0
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 48.0
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 47.9
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 47.9
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 47.9
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 47.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 47.7
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 47.6
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 47.3
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 47.1
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 47.0
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 46.8
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 46.7
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 46.7
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 46.6
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 46.5
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 46.3
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 46.3
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 46.1
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 46.1
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 46.1
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 46.1
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 45.9
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 45.8
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 45.7
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 45.7
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 45.5
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 45.3
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 45.3
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 45.3
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 45.0
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 45.0
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 44.8
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 44.6
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 44.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 44.6
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 44.6
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 44.3
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 44.2
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 44.1
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 44.1
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 44.0
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 43.9
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 43.9
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 43.8
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 43.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 43.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 43.2
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 43.1
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 43.0
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 42.9
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 42.8
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 42.7
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 42.6
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 42.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 42.4
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 42.3
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 42.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 42.3
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 42.2
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 42.2
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 41.8
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 41.2
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 41.2
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 41.1
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 40.9
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 40.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 40.2
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 40.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 39.9
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 39.6
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 39.3
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 38.0
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 37.9
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 35.8
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 33.9
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 33.7
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 33.2
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AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 214.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 214.1
FF:10151-102I7 76 years, female 214.1

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 53.1
Pig sample Sample description nTPM
Amygdala
nTPM: 53.0
Samples: 4

Max nTPM: 57.5
Min nTPM: 48.0
Sample A Female 57.5
Sample B Female 56.9
Sample C Male 48.0
Sample D Male 49.7

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 40.2
Mouse sample Sample description nTPM
Amygdala
nTPM: 40.2
Samples: 4

Max nTPM: 44.3
Min nTPM: 35.1
Sample A Male 35.1
Sample B Male 41.9
Sample C Female 39.6
Sample D Female 44.3

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