MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:21.7 nTPM
HPA:21.7 nTPM
GTEx:52.4 nTPM
FANTOM5:168.4 Scaled Tags Per Million
Pig:32.3 nTPM
Mouse:0.0 nTPM
Allen mouse:0.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 21.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.4
1833 Male, age 53, unknown 18.0
1830 Male, age 51, unknown 17.0
1870 Female, age 42, unknown 16.5
2411 Female, age 72, unknown 16.5
2019 Male, age 18, unknown 14.9
2666 Male, age 74, left hemisphere 13.0
1827 Male, age 72, unknown 12.8
2828 Female, age 72, unknown 12.6
2219 Male, age 76, both hemispheres 11.2
2586 Male, age 75, left hemisphere 11.2
Dorsal raphe nucleus
nTPM: 19.2
2298 Female, age 72, unknown 30.6
2016 Female, age 72, unknown 24.3
1828 Male, age 53, unknown 15.2
2750 Male, age 76, both hemispheres 13.2
2047 Male, age 72, unknown 12.7
Inferior colliculus
nTPM: 15.5
2097 Female, age 72, unknown 20.8
2849 Male, age 72, unknown 14.3
1890 Male, age 53, unknown 14.0
1848 Female, age 42, unknown 13.0
Median raphe nucleus
nTPM: 14.2
2220 Male, age 76, midline 14.2
Pedunculopontine tegmental nucleus
nTPM: 19.0
2338 Male, age 61, both hemispheres 31.0
2334 Male, age 80, both hemispheres 14.2
1921 Female, age 85, both hemispheres 11.9
Periaquaductal grey, anterior
nTPM: 15.5
1795 Male, age 51, unknown 19.9
1947 Male, age 18, unknown 13.9
2502 Female, age 75, unknown 12.5
Periaquaductal grey, dorsal
nTPM: 21.7
1831 Male, age 72, unknown 31.0
2464 Female, age 72, unknown 19.4
2850 Male, age 76, both hemispheres 19.4
1840 Male, age 53, unknown 16.9
Periaquaductal grey, lateral
nTPM: 20.3
2272 Male, age 74, both hemispheres 29.3
2140 Male, age 76, both hemispheres 16.5
2053 Male, age 18, unknown 15.2
Pretectal area
nTPM: 16.5
2224 Female, age 72, unknown 30.7
2273 Male, age 74, both hemispheres 28.9
2316 Male, age 76, right hemisphere 17.1
2407 Male, age 75, both hemispheres 14.8
2825 Male, age 18, unknown 14.2
2667 Female, age 75, unknown 13.3
1817 Female, age 42, unknown 13.1
1815 Male, age 53, unknown 13.0
1944 Female, age 72, unknown 12.5
2007 Male, age 72, unknown 12.3
1816 Male, age 51, unknown 11.9
Red nucleus
nTPM: 13.7
2725 Female, age 75, unknown 16.0
2785 Male, age 18, unknown 14.8
2769 Male, age 72, unknown 14.6
1865 Male, age 51, unknown 14.2
1904 Male, age 53, unknown 14.1
1954 Female, age 42, unknown 13.9
2227 Male, age 72, unknown 13.9
2503 Female, age 72, unknown 13.9
2584 Male, age 75, left hemisphere 13.5
2823 Male, age 76, right hemisphere 13.1
1821 Female, age 72, unknown 11.8
2588 Male, age 74, left hemisphere 10.8
Substantia nigra
nTPM: 14.6
2590 Female, age 75, unknown 21.1
2583 Male, age 75, right hemisphere 18.0
2699 Male, age 18, unknown 15.7
2665 Male, age 74, both hemispheres 14.5
2241 Male, age 72, unknown 13.5
1916 Female, age 42, unknown 13.2
1941 Male, age 53, unknown 13.2
1851 Male, age 51, unknown 13.0
1889 Female, age 72, unknown 12.4
2409 Female, age 72, unknown 11.4
Superior colliculus
nTPM: 16.5
1995 Male, age 72, unknown 24.3
2587 Male, age 74, left hemisphere 23.4
1913 Female, age 42, unknown 19.1
2664 Male, age 75, both hemispheres 15.3
1796 Male, age 53, unknown 14.8
2261 Male, age 18, unknown 14.6
2087 Female, age 72, unknown 14.4
1839 Male, age 51, unknown 13.8
2668 Female, age 75, unknown 12.8
1895 Male, age 76, right hemisphere 12.3
Ventral tegmental area
nTPM: 16.9
2021 Male, age 53, unknown 22.8
1915 Female, age 42, unknown 18.3
2223 Female, age 72, unknown 16.1
1942 Male, age 51, unknown 15.9
2410 Female, age 72, unknown 14.7
2218 Male, age 76, both hemispheres 13.8

MIDBRAIN - GTEx RNA-seqi
Average nTPM 52.4
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 52.4
Samples: 139

Max nTPM: 429.5
Min nTPM: 1.3
Std nTPM: 65.6
Median nTPM: 25.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 429.5
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 252.6
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 234.6
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 234.4
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 207.2
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 199.7
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 195.6
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 192.2
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 171.0
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 162.7
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 159.6
Show allShow less

MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 168.4
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 168.4
FF:10158-103A5 76 years, female 168.4

MIDBRAIN - Pig RNA-seqi
Average nTPM 32.3
Pig sample Sample description nTPM
Midbrain
nTPM: 12.7
Samples: 4

Max nTPM: 17.5
Min nTPM: 7.9
Sample A Female 17.5
Sample B Female 9.6
Sample C Male 15.7
Sample D Male 7.9
Periaqueductal gray
nTPM: 11.5
Samples: 3

Max nTPM: 15.6
Min nTPM: 7.6
Sample B Female 11.2
Sample C Male 15.6
Sample D Male 7.6
Substantia nigra
nTPM: 32.3
Samples: 4

Max nTPM: 61.1
Min nTPM: 19.4
Sample A Female 19.4
Sample B Female 61.1
Sample C Male 19.6
Sample D Male 29.1
Superior colliculi
nTPM: 18.4
Samples: 4

Max nTPM: 23.0
Min nTPM: 13.0
Sample A Female 21.3
Sample B Female 23.0
Sample C Male 16.1
Sample D Male 13.0

MIDBRAIN - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Midbrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 0.1
68744516 Antisense, RP_050208_01_A10, Mouse strain C57BL/6J (56 days, male) 0.1

Contact

The Project

The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.