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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:71.2 nTPM
GTEx:140.9 nTPM
FANTOM5:207.8 Scaled Tags Per Million
Pig:61.0 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 71.2
Sample id Sample description nTPM
Putamen
nTPM: 71.2
2647 Male, age 75, left hemisphere 100.5
1937 Female, age 91, right hemisphere 75.7
2482 Female, age 94, left hemisphere 69.7
1829 Male, age 74, unknown 68.6
1838 Male, age 80, right hemisphere 62.6
2489 Female, age 72, unknown 60.8
2466 Female, age 79, unknown 60.3

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 140.9
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 140.9
Samples: 205

Max nTPM: 251.3
Min nTPM: 50.1
Std nTPM: 33.2
Median nTPM: 138.9
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 251.3
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 250.9
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 246.4
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 237.2
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 231.9
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 228.2
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 212.5
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 211.6
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 210.7
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 194.9
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 193.2
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 190.8
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 190.4
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 189.3
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 188.3
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 186.4
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 185.3
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 183.9
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 182.8
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 180.8
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 180.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 179.0
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 178.4
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 178.3
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 178.2
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 177.0
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 175.7
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 175.4
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 173.8
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 173.1
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 172.6
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 171.9
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 171.9
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 171.0
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 170.2
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 168.3
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 167.7
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 167.1
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 166.1
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 165.2
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 164.7
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 163.8
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 162.8
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 162.8
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 162.4
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 161.9
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 161.7
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 161.1
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 160.6
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 160.5
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 160.1
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 159.5
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 159.2
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 158.7
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 158.7
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 158.3
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 157.1
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 157.0
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 155.9
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 154.9
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 154.6
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 153.6
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 153.4
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 153.2
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 152.2
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 152.1
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 152.0
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 151.6
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 151.5
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 151.3
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 151.2
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 150.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 149.8
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 149.7
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 149.4
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 149.0
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 148.7
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 148.3
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 147.9
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 147.8
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 147.7
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 146.8
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 146.6
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 146.3
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 145.4
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 145.1
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 144.7
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 143.5
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 143.4
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 143.3
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 142.9
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 142.4
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 141.0
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 141.0
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 140.7
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 140.7
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 140.6
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 140.3
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 140.3
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 139.8
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 139.6
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 139.2
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 138.9
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 138.7
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 138.6
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 138.4
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 138.3
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 138.2
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 138.1
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 138.1
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 138.0
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 137.9
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 137.6
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 136.8
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 136.3
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 136.2
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 135.7
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 135.1
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 133.0
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 132.8
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 132.5
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 132.4
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 132.2
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 131.3
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 130.9
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 130.8
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 130.5
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 130.1
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 129.7
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 129.2
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 128.6
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 128.2
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 128.2
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 128.1
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 128.1
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 127.7
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 127.4
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 125.9
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 124.2
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 123.8
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 123.7
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 122.8
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 122.4
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 122.2
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 121.6
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 120.9
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 119.8
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 119.6
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 119.5
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 118.6
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 118.5
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 118.2
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 117.8
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 117.4
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 116.5
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 115.8
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 114.4
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 114.0
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 113.8
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 113.8
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 113.5
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 112.0
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 112.0
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 111.0
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 110.9
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 110.6
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 110.4
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 110.3
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 109.8
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 109.6
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 109.3
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 109.1
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 108.9
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 108.9
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 108.6
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 108.2
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 108.0
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 107.9
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 107.7
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 107.4
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 106.4
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 106.3
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 106.0
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 105.4
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 104.1
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 103.9
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 103.3
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 102.5
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 102.4
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 102.4
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 100.6
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 98.1
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 93.6
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 93.4
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 92.8
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 89.4
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 89.4
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 86.8
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 85.8
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 83.3
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 78.5
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 78.0
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 76.9
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 74.6
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 50.1
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 207.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 207.8
FF:10176-103C5 60 years, female 207.8

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 61.0
Pig sample Sample description nTPM
Putamen
nTPM: 61.1
Samples: 4

Max nTPM: 72.2
Min nTPM: 46.9
Sample A Female 72.2
Sample B Female 46.9
Sample C Male 60.7
Sample D Male 64.4

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