MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:82.7 nTPM
HPA:82.7 nTPM
GTEx:130.1 nTPM
FANTOM5:233.8 Scaled Tags Per Million
Pig:125.1 nTPM
Mouse:117.8 nTPM
Allen mouse:1.1 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 82.7
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 77.2
2586 Male, age 75, left hemisphere 95.4
2219 Male, age 76, both hemispheres 90.0
1827 Male, age 72, unknown 85.2
2828 Female, age 72, unknown 81.1
2666 Male, age 74, left hemisphere 73.6
1870 Female, age 42, unknown 71.6
1830 Male, age 51, unknown 70.5
1833 Male, age 53, unknown 68.7
2019 Male, age 18, unknown 68.2
2411 Female, age 72, unknown 68.0
Dorsal raphe nucleus
nTPM: 58.9
2750 Male, age 76, both hemispheres 63.1
2047 Male, age 72, unknown 62.4
2298 Female, age 72, unknown 59.0
1828 Male, age 53, unknown 57.3
2016 Female, age 72, unknown 52.5
Inferior colliculus
nTPM: 78.6
2849 Male, age 72, unknown 92.3
1848 Female, age 42, unknown 85.8
2097 Female, age 72, unknown 71.1
1890 Male, age 53, unknown 65.1
Median raphe nucleus
nTPM: 65.0
2220 Male, age 76, midline 65.0
Pedunculopontine tegmental nucleus
nTPM: 65.6
2334 Male, age 80, both hemispheres 70.8
1921 Female, age 85, both hemispheres 70.5
2338 Male, age 61, both hemispheres 55.6
Periaquaductal grey, anterior
nTPM: 81.4
1947 Male, age 18, unknown 83.7
2502 Female, age 75, unknown 82.0
1795 Male, age 51, unknown 78.5
Periaquaductal grey, dorsal
nTPM: 64.0
1840 Male, age 53, unknown 70.2
2464 Female, age 72, unknown 66.4
1831 Male, age 72, unknown 60.1
2850 Male, age 76, both hemispheres 59.3
Periaquaductal grey, lateral
nTPM: 63.2
2053 Male, age 18, unknown 67.0
2272 Male, age 74, both hemispheres 61.4
2140 Male, age 76, both hemispheres 61.2
Pretectal area
nTPM: 82.7
2007 Male, age 72, unknown 102.3
1816 Male, age 51, unknown 101.3
1817 Female, age 42, unknown 97.2
1944 Female, age 72, unknown 93.2
2667 Female, age 75, unknown 90.6
1815 Male, age 53, unknown 88.7
2407 Male, age 75, both hemispheres 75.5
2825 Male, age 18, unknown 73.7
2316 Male, age 76, right hemisphere 65.5
2224 Female, age 72, unknown 62.1
2273 Male, age 74, both hemispheres 59.9
Red nucleus
nTPM: 69.0
2785 Male, age 18, unknown 80.8
2584 Male, age 75, left hemisphere 76.9
2588 Male, age 74, left hemisphere 75.3
2503 Female, age 72, unknown 70.0
1821 Female, age 72, unknown 69.2
2769 Male, age 72, unknown 68.9
1865 Male, age 51, unknown 68.0
2227 Male, age 72, unknown 66.6
1904 Male, age 53, unknown 65.0
1954 Female, age 42, unknown 64.7
2725 Female, age 75, unknown 61.8
2823 Male, age 76, right hemisphere 60.7
Substantia nigra
nTPM: 72.3
1941 Male, age 53, unknown 92.8
2665 Male, age 74, both hemispheres 91.4
1889 Female, age 72, unknown 88.5
2583 Male, age 75, right hemisphere 71.8
1851 Male, age 51, unknown 69.6
2699 Male, age 18, unknown 66.1
2409 Female, age 72, unknown 65.3
1916 Female, age 42, unknown 64.0
2590 Female, age 75, unknown 62.9
2241 Male, age 72, unknown 50.3
Superior colliculus
nTPM: 79.6
2668 Female, age 75, unknown 88.9
1796 Male, age 53, unknown 86.0
1895 Male, age 76, right hemisphere 83.4
2261 Male, age 18, unknown 82.4
2087 Female, age 72, unknown 80.8
2664 Male, age 75, both hemispheres 80.0
1839 Male, age 51, unknown 77.3
1913 Female, age 42, unknown 75.6
2587 Male, age 74, left hemisphere 71.4
1995 Male, age 72, unknown 70.0
Ventral tegmental area
nTPM: 64.5
2410 Female, age 72, unknown 74.1
1915 Female, age 42, unknown 66.5
2218 Male, age 76, both hemispheres 66.2
2223 Female, age 72, unknown 63.8
1942 Male, age 51, unknown 61.5
2021 Male, age 53, unknown 54.7

MIDBRAIN - GTEx RNA-seqi
Average nTPM 130.1
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 130.1
Samples: 139

Max nTPM: 375.5
Min nTPM: 58.2
Std nTPM: 42.0
Median nTPM: 123.0
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 375.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 278.2
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 221.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 219.0
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 197.1
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 196.9
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 194.1
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 193.5
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 193.4
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 189.9
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 189.8
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 233.8
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 233.8
FF:10158-103A5 76 years, female 233.8

MIDBRAIN - Pig RNA-seqi
Average nTPM 125.1
Pig sample Sample description nTPM
Midbrain
nTPM: 115.4
Samples: 4

Max nTPM: 163.5
Min nTPM: 76.7
Sample A Female 96.5
Sample B Female 76.7
Sample C Male 163.5
Sample D Male 125.0
Periaqueductal gray
nTPM: 87.9
Samples: 3

Max nTPM: 98.2
Min nTPM: 77.5
Sample B Female 77.5
Sample C Male 98.2
Sample D Male 87.9
Substantia nigra
nTPM: 90.3
Samples: 4

Max nTPM: 124.4
Min nTPM: 68.8
Sample A Female 124.4
Sample B Female 68.8
Sample C Male 95.7
Sample D Male 72.3
Superior colliculi
nTPM: 125.1
Samples: 4

Max nTPM: 150.2
Min nTPM: 87.4
Sample A Female 136.1
Sample B Female 87.4
Sample C Male 150.2
Sample D Male 126.7

MIDBRAIN - Mouse RNA-seqi
Average nTPM 117.8
Mouse sample Sample description nTPM
Midbrain
nTPM: 117.8
Samples: 4

Max nTPM: 135.5
Min nTPM: 108.5
Sample A Male 135.5
Sample B Male 108.8
Sample C Female 108.5
Sample D Female 118.4

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.1
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.1
75214942 Antisense, RP_060427_01_A10, Mouse strain C57BL/6J (56 days, male) 1.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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