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MRPS33
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BRAIN SUBSTANTIA NIGRA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
SUBSTANTIA NIGRA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:45.9 nTPM
GTEx:59.7 nTPM
FANTOM5:44.7 Scaled Tags Per Million
Pig:34.1 nTPM

SUBSTANTIA NIGRA - Annotated protein expression
Pending normal tissue analysis

SUBSTANTIA NIGRA - HPA Brain RNA-seq
Avg nTPM 45.9
Sample id Sample description nTPM
Substantia nigra
nTPM: 45.9
2241 Male, age 72, unknown 50.3
1916 Female, age 42, unknown 49.2
1851 Male, age 51, unknown 48.7
2409 Female, age 72, unknown 46.8
2699 Male, age 18, unknown 45.4
1941 Male, age 53, unknown 45.3
1889 Female, age 72, unknown 44.9
2665 Male, age 74, both hemispheres 43.4
2590 Female, age 75, unknown 43.3
2583 Male, age 75, right hemisphere 42.0

SUBSTANTIA NIGRA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 59.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 59.7
Samples: 139

Max nTPM: 120.0
Min nTPM: 34.2
Std nTPM: 14.6
Median nTPM: 57.1
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 120.0
GTEX-13O3Q-0011-R2b-SM-5KM3K 50-59 years, male 107.3
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 105.9
GTEX-1IGQW-0011-R2b-SM-D4P26 60-69 years, male 97.2
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 93.3
GTEX-1IY9M-0011-R2a-SM-D4P29 60-69 years, male 92.2
GTEX-ZV68-0011-R2a-SM-4YCDK 50-59 years, female 90.7
GTEX-11GS4-0011-R2a-SM-DO942 60-69 years, male 86.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 82.0
GTEX-12WSH-0011-R2a-SM-5GU68 50-59 years, male 81.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 81.2
GTEX-1399T-0011-R2b-SM-5DUXM 60-69 years, male 78.6
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 78.6
GTEX-1CB4G-0011-R2a-SM-9QEGQ 60-69 years, male 78.3
GTEX-1LVAO-0011-R2a-SM-EYYX1 60-69 years, male 77.5
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 77.4
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 76.2
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 76.0
GTEX-1F75B-0011-R2a-SM-ARL8I 50-59 years, male 74.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 74.5
GTEX-1A8G7-0011-R2a-SM-7IGQI 60-69 years, male 74.3
GTEX-1MA7X-0011-R2b-SM-EZ6MT 60-69 years, male 73.7
GTEX-11GSP-0011-R2b-SM-9QEGE 60-69 years, female 72.3
GTEX-1H3O1-0011-R2b-SM-CKZOT 60-69 years, male 72.1
GTEX-13G51-0011-R2b-SM-5LZXS 60-69 years, male 70.4
GTEX-1F48J-0011-R2a-SM-CL535 50-59 years, female 70.3
GTEX-13OW6-0011-R2a-SM-5L3HG 50-59 years, male 69.3
GTEX-1HB9E-0011-R2b-SM-A96RW 50-59 years, male 69.3
GTEX-1GN73-0011-R2a-SM-CJI2V 60-69 years, male 69.1
GTEX-1GN1U-0011-R2a-SM-CL53A 50-59 years, female 67.1
GTEX-T2IS-0011-R2A-SM-32QPF 20-29 years, female 66.9
GTEX-PWO3-0011-R2A-SM-2S1OX 60-69 years, female 66.5
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 66.3
GTEX-1A3MX-0011-R2b-SM-7EWFL 60-69 years, male 65.6
GTEX-1EKGG-0011-R2a-SM-CE6R8 60-69 years, male 65.6
GTEX-1E1VI-0011-R2a-SM-9QEGS 50-59 years, male 65.4
GTEX-R55E-0011-R2A-SM-EYYV9 20-29 years, male 65.3
GTEX-QMR6-0011-R2A-SM-32PKV 50-59 years, male 64.9
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 64.9
GTEX-1H3VE-0011-R2a-SM-CE6SA 40-49 years, male 64.6
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 64.4
GTEX-1GMR8-0011-R2a-SM-CE6RD 50-59 years, female 64.2
GTEX-1HFI6-0011-R2a-SM-CMKH5 40-49 years, male 64.1
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 64.0
GTEX-1JMQK-0011-R2a-SM-EYYXQ 60-69 years, male 63.4
GTEX-14JG1-0011-R2a-SM-5ZZVE 40-49 years, male 63.2
GTEX-XLM4-0011-R2B-SM-4AT5Z 60-69 years, male 62.9
GTEX-13FXS-0011-R2b-SM-5K7XX 50-59 years, male 62.7
GTEX-11WQC-0011-R2a-SM-DO927 60-69 years, male 62.6
GTEX-13CF2-0011-R2a-SM-5L3DC 60-69 years, male 62.4
GTEX-11EMC-0011-R2b-SM-DO114 60-69 years, female 62.4
GTEX-1H1DG-0011-R2a-SM-ADEIQ 70-79 years, male 62.0
GTEX-13RTJ-0011-R2a-SM-5PNW9 60-69 years, male 61.6
GTEX-YJ89-0011-R2b-SM-4RGLT 60-69 years, male 61.6
GTEX-17EVP-0011-R2a-SM-7LG4W 40-49 years, male 60.8
GTEX-1EU9M-0011-R2b-SM-9QEH7 60-69 years, male 60.4
GTEX-12WSA-0011-R2a-SM-57WDK 60-69 years, male 60.3
GTEX-1F6I4-0011-R2a-SM-CL536 60-69 years, male 60.3
GTEX-UTHO-0011-R2A-SM-3GIKC 60-69 years, male 59.8
GTEX-1J8Q2-0011-R2b-SM-EAZ2X 60-69 years, male 59.7
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 59.3
GTEX-1GTWX-0011-R2b-SM-ADEH5 60-69 years, male 59.0
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 58.8
GTEX-T5JC-0011-R2A-SM-32PLZ 20-29 years, male 58.7
GTEX-132Q8-0011-R2b-SM-5EQ5Z 60-69 years, male 58.3
GTEX-13SLX-0011-R2b-SM-5S2VP 50-59 years, female 58.3
GTEX-S7SE-0011-R2A-SM-2XCDC 50-59 years, male 58.1
GTEX-1HR98-0011-R2a-SM-ARL7A 60-69 years, male 57.9
GTEX-1I1CD-0011-R2a-SM-CM2T3 60-69 years, female 57.8
GTEX-17HG3-0011-R2a-SM-7MGVX 30-39 years, female 57.1
GTEX-14PN4-0011-R2a-SM-6EU2Y 50-59 years, male 57.0
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 57.0
GTEX-1LH75-0011-R2b-SM-EYYWQ 50-59 years, female 56.9
GTEX-131XH-0011-R2b-SM-5DUVY 50-59 years, male 56.6
GTEX-15CHQ-0011-R2b-SM-6AJAD 60-69 years, male 56.4
GTEX-13N2G-0011-R2a-SM-5MR4Q 60-69 years, male 56.3
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 56.3
GTEX-1GN2E-0011-R2a-SM-9WG7D 60-69 years, male 56.1
GTEX-1HT8W-0011-R2a-SM-CMKH9 30-39 years, male 55.6
GTEX-1C6VR-0011-R2a-SM-7RHGZ 60-69 years, male 55.4
GTEX-1HSMO-0011-R2a-SM-CL553 60-69 years, male 54.8
GTEX-1445S-0011-R2b-SM-5PNUH 60-69 years, male 54.5
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 54.5
GTEX-1IKJJ-0011-R2b-SM-ARZLJ 60-69 years, male 54.3
GTEX-12WSF-0011-R2a-SM-5DUVU 70-79 years, male 54.2
GTEX-13OW8-0011-R2a-SM-5L3G2 60-69 years, male 53.8
GTEX-P44G-0011-R2A-SM-2XCD2 30-39 years, male 53.7
GTEX-15RJE-0011-R2b-SM-79OMP 40-49 years, male 53.5
GTEX-145LS-0011-R2a-SM-5PNZI 60-69 years, female 53.4
GTEX-WHSE-0011-R2A-SM-3P5ZL 20-29 years, male 53.4
GTEX-13SLW-0011-R2b-SM-5O9C6 70-79 years, male 53.3
GTEX-QDT8-0011-R2A-SM-32PKQ 30-39 years, female 53.3
GTEX-13X6I-0011-R2b-SM-5PNWQ 60-69 years, male 52.9
GTEX-15DYW-0011-R2b-SM-7KUKY 60-69 years, female 52.6
GTEX-1RLM8-0011-R2a-SM-EZ6N4 50-59 years, male 52.6
GTEX-13O3O-0011-R2b-SM-5P9H1 60-69 years, female 52.3
GTEX-1I1GS-0011-R2b-SM-CMKHG 60-69 years, male 52.2
GTEX-NPJ7-0011-R2a-SM-2I3GF 60-69 years, female 52.1
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 52.0
GTEX-11GSO-0011-R2a-SM-57WDF 60-69 years, male 51.9
GTEX-1B8SG-0011-R2b-SM-79OOT 50-59 years, male 51.5
GTEX-1GZ2Q-0011-R2b-SM-9OSWO 40-49 years, male 51.4
GTEX-T6MN-0011-R2A-SM-32QOW 50-59 years, male 51.1
GTEX-XMD1-0011-R2B-SM-4AT5N 60-69 years, male 50.5
GTEX-11PRG-0011-R2a-SM-69LQ5 50-59 years, male 50.4
GTEX-16Z82-0011-R2b-SM-79OK9 60-69 years, male 50.3
GTEX-1LSNL-0011-R2a-SM-EZ6MK 50-59 years, male 50.2
GTEX-1F6IF-0011-R2b-SM-9QEHB 60-69 years, male 50.0
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 49.3
GTEX-NL4W-0011-R2a-SM-2I5GV 50-59 years, male 48.2
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 48.1
GTEX-15EO6-0011-R2a-SM-6M46R 50-59 years, male 47.9
GTEX-RU72-0011-R2A-SM-2TF6O 50-59 years, female 47.5
GTEX-1H23P-0011-R2a-SM-CKZP3 60-69 years, male 47.3
GTEX-14ASI-0011-R2b-SM-5YY9H 60-69 years, male 47.1
GTEX-ZAB4-0011-R2a-SM-4RGNP 40-49 years, male 47.1
GTEX-18464-0011-R2a-SM-731AL 50-59 years, male 47.0
GTEX-15DCD-0011-R2b-SM-6LPIE 70-79 years, female 46.7
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 46.2
GTEX-1B996-0011-R2a-SM-7IGON 60-69 years, male 46.1
GTEX-11ZTS-0011-R2b-SM-5BC75 60-69 years, female 45.8
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 45.0
GTEX-139TS-0011-R2b-SM-5J1MX 60-69 years, male 44.7
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 44.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 43.8
GTEX-11TUW-0011-R2b-SM-DO92T 60-69 years, male 43.2
GTEX-13OVJ-0011-R2b-SM-5L3GP 50-59 years, female 42.5
GTEX-1J1OQ-0011-R2b-SM-ARU88 40-49 years, female 41.9
GTEX-11UD1-0011-R2b-SM-5BC6O 40-49 years, female 41.8
GTEX-NPJ8-0011-R2a-SM-2TC6M 40-49 years, male 41.7
GTEX-14BIN-0011-R2a-SM-5S2RJ 50-59 years, female 41.4
GTEX-14PJO-0011-R2a-SM-5ZZVF 60-69 years, male 41.2
GTEX-OHPN-0011-R2A-SM-2I5FB 60-69 years, female 39.6
GTEX-13QJC-0011-R2b-SM-5PNUN 60-69 years, female 39.2
GTEX-1IL2U-0011-R2a-SM-ARU6V 60-69 years, male 38.1
GTEX-N7MT-0011-R2a-SM-2I3GI 60-69 years, female 36.3
GTEX-YFC4-0011-R2a-SM-4V6DZ 40-49 years, female 36.3
GTEX-13X6K-0011-R2b-SM-5P9K3 60-69 years, female 34.2
GTEX-1I1GV-0011-R2a-SM-ARZLF 60-69 years, male 34.2
Show allShow less

SUBSTANTIA NIGRA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 44.7
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 44.7
FF:10158-103A5 76 years, female 44.7

SUBSTANTIA NIGRA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 34.1
Pig sample Sample description nTPM
Substantia nigra
nTPM: 34.2
Samples: 4

Max nTPM: 43.6
Min nTPM: 25.1
Sample A Female 43.6
Sample B Female 29.4
Sample C Male 38.5
Sample D Male 25.1

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