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BRAIN PUTAMEN Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
PUTAMEN - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
HPA:110.4 nTPM
GTEx:101.3 nTPM
FANTOM5:255.0 Scaled Tags Per Million
Pig:37.0 nTPM

PUTAMEN - HPA Brain RNA-seq
Avg nTPM 110.4
Sample id Sample description nTPM
Putamen
nTPM: 110.4
2482 Female, age 94, left hemisphere 116.1
2647 Male, age 75, left hemisphere 115.4
1829 Male, age 74, unknown 110.9
2489 Female, age 72, unknown 110.6
1838 Male, age 80, right hemisphere 107.7
2466 Female, age 79, unknown 106.3
1937 Female, age 91, right hemisphere 105.5

PUTAMEN - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 101.3
GTEx sample id Sample description nTPM
Brain - Putamen (basal ganglia)
Average nTPM: 101.3
Samples: 205

Max nTPM: 284.2
Min nTPM: 50.9
Std nTPM: 25.8
Median nTPM: 97.2
GTEX-13N2G-0011-R7a-SM-5MR42 60-69 years, male 284.2
GTEX-1B996-0011-R7b-SM-7IGNT 60-69 years, male 246.0
GTEX-13OVJ-0011-R7a-SM-5L3G1 50-59 years, female 168.9
GTEX-13JVG-0011-R7b-SM-5MR3Q 60-69 years, male 162.9
GTEX-12ZZW-0011-R7a-SM-5DUWC 50-59 years, male 159.9
GTEX-13PVQ-0011-R7a-SM-5L3G3 50-59 years, male 152.5
GTEX-1J8Q2-0011-R7a-SM-CKZPF 60-69 years, male 152.3
GTEX-11DZ1-0011-R7a-SM-DNZZH 50-59 years, male 150.5
GTEX-S7SE-0011-R7A-SM-2XCDI 50-59 years, male 147.7
GTEX-ZV68-0011-R7a-SM-51MT4 50-59 years, female 145.8
GTEX-ZE7O-0011-R7a-SM-57WCU 50-59 years, female 145.4
GTEX-1ICLZ-0011-R7a-SM-ARZLU 60-69 years, male 143.6
GTEX-13N1W-0011-R7b-SM-5MR4F 70-79 years, male 142.4
GTEX-1HCVE-0011-R7b-SM-A9G1I 50-59 years, male 141.0
GTEX-1IY9M-0011-R7a-SM-D4P49 60-69 years, male 137.9
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 137.6
GTEX-144GO-0011-R7b-SM-5S2TT 60-69 years, male 132.4
GTEX-1GN73-0011-R7a-SM-CJI2U 60-69 years, male 129.6
GTEX-12WSA-0011-R7b-SM-5GU5U 60-69 years, male 129.2
GTEX-13CF2-0011-R7b-SM-5K7UV 60-69 years, male 128.3
GTEX-WWYW-0011-R7A-SM-3NB3H 50-59 years, female 128.1
GTEX-17F97-0011-R7b-SM-7MGVY 50-59 years, male 126.7
GTEX-132Q8-0011-R7b-SM-5N9F1 60-69 years, male 126.3
GTEX-1LSNL-0011-R7a-SM-EYYWI 50-59 years, male 125.1
GTEX-N7MT-0011-R7a-SM-2I3FZ 60-69 years, female 124.9
GTEX-12WSI-0011-R7b-SM-5GU78 50-59 years, male 123.9
GTEX-1GTWX-0011-R7a-SM-A96RO 60-69 years, male 121.4
GTEX-13FHO-0011-R7b-SM-5LZXD 60-69 years, male 121.2
GTEX-NPJ8-0011-R7a-SM-2HMJV 40-49 years, male 121.2
GTEX-1GF9W-0011-R7b-SM-9QEIF 60-69 years, male 119.7
GTEX-1AX9I-0011-R7b-SM-7P8Q3 60-69 years, male 119.5
GTEX-1IDJH-0011-R7a-SM-A9SM1 70-79 years, male 118.2
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 117.9
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 117.7
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 117.1
GTEX-1I1GQ-0011-R7a-SM-CJI41 50-59 years, male 117.0
GTEX-14PN4-0011-R7b-SM-69LQQ 50-59 years, male 115.7
GTEX-17EVP-0011-R7a-SM-7LTAN 40-49 years, male 114.9
GTEX-11PRG-0011-R7a-SM-DNZZT 50-59 years, male 114.4
GTEX-1LVAO-0011-R7a-SM-EYYWZ 60-69 years, male 113.6
GTEX-13O3O-0011-R7b-SM-5P9GZ 60-69 years, female 112.8
GTEX-131YS-0011-R7a-SM-5IJDA 60-69 years, female 112.3
GTEX-1IKOH-0011-R7b-SM-CKZPH 60-69 years, female 112.0
GTEX-11NV4-0011-R7a-SM-57WDH 60-69 years, male 111.9
GTEX-17MF6-0011-R7b-SM-7LG6J 40-49 years, male 111.8
GTEX-14E7W-0011-R7b-SM-5ZZV4 70-79 years, male 111.7
GTEX-11ONC-0011-R7b-SM-DO93J 60-69 years, male 111.7
GTEX-14PJM-0011-R7a-SM-6AJBX 50-59 years, female 111.3
GTEX-1HGF4-0011-R7a-SM-A96S2 60-69 years, male 111.1
GTEX-13G51-0011-R7b-SM-5LZXG 60-69 years, male 111.0
GTEX-12WSF-0011-R7b-SM-5HL99 70-79 years, male 110.9
GTEX-14LZ3-0011-R7a-SM-69LQN 60-69 years, female 110.4
GTEX-11DYG-0011-R7b-SM-EXUS6 60-69 years, male 110.0
GTEX-1LH75-0011-R7a-SM-EXOIF 50-59 years, female 109.7
GTEX-1R46S-0011-R7b-SM-EXUTH 60-69 years, female 108.5
GTEX-145MG-0011-R7b-SM-5P9JY 50-59 years, male 108.1
GTEX-1F75B-0011-R7a-SM-ARU84 50-59 years, male 107.9
GTEX-P44G-0011-R7A-SM-2I3F9 30-39 years, male 107.4
GTEX-11OF3-0011-R7a-SM-57WCG 60-69 years, male 107.1
GTEX-RU72-0011-R7A-SM-2TF5U 50-59 years, female 106.4
GTEX-1F75A-0011-R7b-SM-9QEHE 50-59 years, male 106.4
GTEX-1GN2E-0011-R7b-SM-9QEIJ 60-69 years, male 106.4
GTEX-15G19-0011-R7b-SM-6M479 60-69 years, male 106.2
GTEX-1LVA9-0011-R7a-SM-EYYWG 50-59 years, male 106.1
GTEX-15CHQ-0011-R7b-SM-D4P1Q 60-69 years, male 106.0
GTEX-13X6K-0011-R7b-SM-5P9K7 60-69 years, female 105.8
GTEX-16YQH-0011-R7a-SM-79ON1 30-39 years, male 105.8
GTEX-1B8SF-0011-R7b-SM-9OSVM 60-69 years, male 105.7
GTEX-13S7M-0011-R7a-SM-5O9DK 60-69 years, female 105.6
GTEX-16Z82-0011-R7a-SM-7MKGJ 60-69 years, male 105.6
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 105.6
GTEX-1F52S-0011-R7b-SM-9QEH8 60-69 years, female 105.6
GTEX-1IKJJ-0011-R7a-SM-ARZLH 60-69 years, male 105.4
GTEX-1MA7X-0011-R7b-SM-EYYWS 60-69 years, male 105.2
GTEX-1OJC4-0011-R7a-SM-EYYX4 50-59 years, female 105.2
GTEX-1B8L1-0011-R7b-SM-9OSVK 60-69 years, male 105.0
GTEX-12WSD-0011-R7b-SM-5PNWE 60-69 years, female 104.9
GTEX-12ZZZ-0011-R7b-SM-5EGLE 60-69 years, male 104.5
GTEX-NPJ7-0011-R7a-SM-EV79B 60-69 years, female 104.4
GTEX-1IKK5-0011-R7b-SM-A9G39 60-69 years, male 104.1
GTEX-TSE9-0011-R7A-SM-3DB7P 60-69 years, female 103.2
GTEX-18464-0011-R7b-SM-731CM 50-59 years, male 102.9
GTEX-1EKGG-0011-R7a-SM-CKZNN 60-69 years, male 102.6
GTEX-12WSM-0011-R7b-SM-5EGLD 60-69 years, male 102.3
GTEX-145MH-0011-R7a-SM-5PNWH 50-59 years, male 102.1
GTEX-13O3Q-0011-R7a-SM-5KM38 50-59 years, male 102.0
GTEX-ZVZQ-0011-R7b-SM-57WBB 60-69 years, female 101.6
GTEX-11DXW-0011-R7b-SM-DO119 40-49 years, male 101.5
GTEX-17HG3-0011-R7b-SM-7EPGR 30-39 years, female 101.2
GTEX-11GSP-0011-R7b-SM-57WC3 60-69 years, female 100.9
GTEX-13X6I-0011-R7b-SM-5PNWP 60-69 years, male 100.1
GTEX-15ER7-0011-R7a-SM-6M46N 20-29 years, female 99.3
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 99.2
GTEX-13OW5-0011-R7a-SM-5O9C9 60-69 years, male 98.8
GTEX-ZUA1-0011-R7b-SM-4YCDP 40-49 years, male 98.6
GTEX-1EH9U-0011-R7a-SM-9QEGU 60-69 years, male 98.3
GTEX-N7MS-0011-R7a-SM-2HMKN 60-69 years, male 97.8
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 97.7
GTEX-1I1CD-0011-R7a-SM-CMKHA 60-69 years, female 97.7
GTEX-1H3NZ-0011-R7a-SM-A9SKD 60-69 years, male 97.6
GTEX-13FLV-0011-R7b-SM-5K7WW 50-59 years, male 97.5
GTEX-13X6J-0011-R7b-SM-5PNUC 50-59 years, male 97.5
GTEX-1JMQK-0011-R7b-SM-EXUTF 60-69 years, male 97.2
GTEX-1IOXB-0011-R7b-SM-CE6SM 50-59 years, male 97.1
GTEX-ZAB4-0011-R7a-SM-4SOKE 40-49 years, male 97.0
GTEX-1E1VI-0011-R7b-SM-9QEGR 50-59 years, male 96.9
GTEX-147GR-0011-R7a-SM-5S2RP 60-69 years, male 96.5
GTEX-RNOR-0011-R7A-SM-2TF4V 50-59 years, female 96.5
GTEX-139TT-0011-R7b-SM-5J2MN 60-69 years, male 96.4
GTEX-1EN7A-0011-R7b-SM-9QEHX 40-49 years, male 96.1
GTEX-1MJK2-0011-R7a-SM-EXUS4 50-59 years, male 96.0
GTEX-1C6WA-0011-R7b-SM-7P8S8 60-69 years, male 95.8
GTEX-1HB9E-0011-R7b-SM-A9G1Q 50-59 years, male 95.6
GTEX-1313W-0011-R7b-SM-5DUWL 50-59 years, female 95.4
GTEX-1GMRU-0011-R7b-SM-A96TJ 50-59 years, male 94.8
GTEX-11NUK-0011-R7a-SM-DO93P 50-59 years, male 94.5
GTEX-145LS-0011-R7a-SM-5PNWM 60-69 years, female 94.4
GTEX-14C5O-0011-R7b-SM-5YYAH 60-69 years, male 94.4
GTEX-1EX96-0011-R7a-SM-9OSVW 50-59 years, male 94.4
GTEX-1H1DG-0011-R7b-SM-A96RR 70-79 years, male 94.3
GTEX-14BIN-0011-R7b-SM-5S2RI 50-59 years, female 94.2
GTEX-13QJC-0011-R7b-SM-5PNUM 60-69 years, female 94.1
GTEX-1H3VE-0011-R7b-SM-CE6S9 40-49 years, male 94.0
GTEX-1EMGI-0011-R7b-SM-9QEH5 60-69 years, male 93.6
GTEX-1H3O1-0011-R7a-SM-CE6SJ 60-69 years, male 93.3
GTEX-1GZ4I-0011-R7b-SM-ARU71 50-59 years, male 93.2
GTEX-1B933-0011-R7a-SM-7DUGX 50-59 years, female 92.9
GTEX-15DYW-0011-R7a-SM-7KULG 60-69 years, female 92.4
GTEX-1E2YA-0011-R7a-SM-CJI1Z 50-59 years, male 92.0
GTEX-13112-0011-R7b-SM-5DUVW 50-59 years, male 91.7
GTEX-13NYB-0011-R7a-SM-5MR5D 40-49 years, male 91.7
GTEX-18465-0011-R7b-SM-7LG6V 50-59 years, male 91.6
GTEX-13OW8-0011-R7a-SM-5L3FP 60-69 years, male 91.5
GTEX-1JJ6O-0011-R7b-SM-EXUTB 60-69 years, male 91.1
GTEX-13FHP-0011-R7b-SM-5LZYI 50-59 years, male 90.0
GTEX-14ASI-0011-R7b-SM-5YY9G 60-69 years, male 89.3
GTEX-15RJE-0011-R7a-SM-7DHL9 40-49 years, male 89.2
GTEX-ZXG5-0011-R7b-SM-57WCC 60-69 years, male 88.8
GTEX-1H4P4-0011-R7b-SM-ARU77 50-59 years, male 88.4
GTEX-17EVQ-0011-R7a-SM-7EWDA 70-79 years, male 88.3
GTEX-1CB4G-0011-R7b-SM-9QEGP 60-69 years, male 87.9
GTEX-139TS-0011-R7a-SM-5K7X7 60-69 years, male 87.3
GTEX-X261-0011-R7A-SM-4E3JJ 50-59 years, male 87.1
GTEX-1CB4H-0011-R7b-SM-CJI27 60-69 years, female 87.1
GTEX-1F75W-0011-R7a-SM-9QEI6 60-69 years, male 86.8
GTEX-1F48J-0011-R7a-SM-CJI2G 50-59 years, female 86.7
GTEX-1GF9V-0011-R7a-SM-CJI2R 60-69 years, male 86.5
GTEX-1192X-0011-R7b-SM-DNZZC 50-59 years, male 86.2
GTEX-OHPN-0011-R7A-SM-2I5FI 60-69 years, female 85.7
GTEX-1HT8W-0011-R7b-SM-CMKH8 30-39 years, male 85.7
GTEX-WHSE-0011-R7A-SM-3P5YZ 20-29 years, male 85.6
GTEX-1GMR8-0011-R7b-SM-CJI2I 50-59 years, female 85.5
GTEX-183WM-0011-R7b-SM-731AX 70-79 years, female 85.3
GTEX-14PJO-0011-R7a-SM-664NR 60-69 years, male 85.1
GTEX-13CZV-0011-R7b-SM-5LZXH 60-69 years, male 84.8
GTEX-1A8G6-0011-R7b-SM-7MXTV 60-69 years, male 84.8
GTEX-13JUV-0011-R7b-SM-5LZZG 40-49 years, female 84.5
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 84.3
GTEX-1A3MX-0011-R7a-SM-7DUEM 60-69 years, male 84.2
GTEX-1F6I4-0011-R7a-SM-CJI24 60-69 years, male 84.2
GTEX-1J1OQ-0011-R7b-SM-ARU87 40-49 years, female 84.2
GTEX-12WSC-0011-R7b-SM-5LU9L 50-59 years, male 83.8
GTEX-11DXY-0011-R7a-SM-DO11L 60-69 years, male 83.8
GTEX-13RTJ-0011-R7b-SM-5P9JS 60-69 years, male 83.7
GTEX-Q2AG-0011-R7A-SM-2HMJP 40-49 years, female 83.7
GTEX-13FLW-0011-R7b-SM-5L3EZ 50-59 years, male 83.4
GTEX-1445S-0011-R7b-SM-5PNUG 60-69 years, male 83.4
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 83.1
GTEX-11TTK-0011-R7b-SM-DNZZZ 60-69 years, female 83.1
GTEX-T5JC-0011-R7A-SM-32PME 20-29 years, male 82.7
GTEX-R55E-0011-R7A-SM-2TC5Z 20-29 years, male 82.3
GTEX-XLM4-0011-R7A-SM-4AT5L 60-69 years, male 81.9
GTEX-ZVT3-0011-R7a-SM-57WCO 60-69 years, female 81.1
GTEX-QVJO-0011-R7A-SM-2S1QO 60-69 years, female 80.7
GTEX-1C64N-0011-R7a-SM-7IGOI 50-59 years, male 80.5
GTEX-1H1CY-0011-R7a-SM-CJI32 60-69 years, female 80.0
GTEX-1I1GV-0011-R7a-SM-ARU6R 60-69 years, male 78.5
GTEX-13OW6-0011-R7b-SM-5L3H4 50-59 years, male 78.3
GTEX-14ABY-0011-R7b-SM-5PNWS 50-59 years, male 78.1
GTEX-13OVL-0011-R7a-SM-5P9GW 50-59 years, male 77.9
GTEX-T6MN-0011-R7A-SM-32QP5 50-59 years, male 77.7
GTEX-12ZZY-0011-R7a-SM-5EGLB 60-69 years, male 77.6
GTEX-17HII-0011-R7a-SM-79OMS 50-59 years, male 77.2
GTEX-12WSE-0011-R7a-SM-5PNWF 20-29 years, male 77.1
GTEX-WZTO-0011-R7B-SM-4E3IS 40-49 years, male 77.1
GTEX-13VXU-0011-R7b-SM-5SI72 50-59 years, male 76.9
GTEX-15DCD-0011-R7b-SM-6LPID 70-79 years, female 76.8
GTEX-WL46-0011-R7A-SM-3LK7X 50-59 years, male 76.8
GTEX-1GZ2Q-0011-R7b-SM-9OSWN 40-49 years, male 76.6
GTEX-1HFI6-0011-R7b-SM-CM2SS 40-49 years, male 76.5
GTEX-17HHY-0011-R7a-SM-718A1 50-59 years, male 75.8
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 75.4
GTEX-14BMV-0011-R7b-SM-5YY9J 50-59 years, male 74.9
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 74.8
GTEX-13FXS-0011-R7a-SM-5L3FC 50-59 years, male 73.9
GTEX-1H23P-0011-R7b-SM-CKZP2 60-69 years, male 72.1
GTEX-1H1ZS-0011-R7a-SM-CL54P 70-79 years, male 72.0
GTEX-1I1GS-0011-R7a-SM-CM2T6 60-69 years, male 70.9
GTEX-15EO6-0011-R7a-SM-6M46Q 50-59 years, male 69.5
GTEX-12ZZX-0011-R7b-SM-5DUVV 40-49 years, female 69.1
GTEX-144GL-0011-R7b-SM-5P9HX 50-59 years, male 68.2
GTEX-14JG1-0011-R7b-SM-5YYAV 40-49 years, male 65.1
GTEX-QDT8-0011-R7A-SM-32PKF 30-39 years, female 64.7
GTEX-WVLH-0011-R7A-SM-3MJFB 50-59 years, male 63.7
GTEX-QMR6-0011-R7A-SM-32PKL 50-59 years, male 50.9
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PUTAMEN - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 255.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Putamen
Scaled Tags Per Million: 255.0
FF:10176-103C5 60 years, female 255.0

PUTAMEN - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 37.0
Pig sample Sample description nTPM
Putamen
nTPM: 37.1
Samples: 4

Max nTPM: 47.4
Min nTPM: 30.5
Sample A Female 32.9
Sample B Female 30.5
Sample C Male 47.4
Sample D Male 37.4

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