HIPPOCAMPAL FORMATION - Expression summary
Protein expression
Hippocampusi
h
m
l
n
Glial cells: Low
Neuronal cells: High
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:17.9 nTPM
HPA:17.9 nTPM
GTEx:23.3 nTPM
FANTOM5:48.6 Scaled Tags Per Million
Pig:5.7 nTPM
Mouse:50.4 nTPM
Allen mouse:3.0 Expression energy

HIPPOCAMPUS - Antibody stainingi
Antibody HPA010814Antibody HPA017051
Glial cells LowLow
Neuronal cells HighHigh





HIPPOCAMPAL FORMATION - HPA Brain RNA-seq
Max nTPM 17.9
Sample id Sample description nTPM
Hippocampus
nTPM: 17.5
1898 Male, age 80, left hemisphere 19.6
2529 Female, age 94, left hemisphere 18.0
2621 Female, age 67, right hemisphere 17.5
1855 Male, age 76, left hemisphere 17.4
2148 Female, age 91, left hemisphere 16.5
1911 Female, age 85, right hemisphere 15.9
Dentate gyrus
nTPM: 17.6
2010 Male, age 76, both hemispheres 21.1
2530 Female, age 94, left hemisphere 18.4
1927 Female, age 91, both hemispheres 17.0
2246 Female, age 85, both hemispheres 16.9
2528 Male, age 74, both hemispheres 16.1
2531 Female, age 67, both hemispheres 16.0
Entorhinal gyrus
nTPM: 15.9
2117 Female, age 91, right hemisphere 17.4
1938 Female, age 85, left hemisphere 16.7
1787 Male, age 76, left hemisphere 15.8
2686 Male, age 75, right hemisphere 15.7
2764 Male, age 80, right hemisphere 15.5
2613 Female, age 94, left hemisphere 14.2
Hippocampus, CA1
nTPM: 17.8
2749 Male, age 80, left hemisphere 20.7
2045 Male, age 76, both hemispheres 18.2
1873 Female, age 85, both hemispheres 17.8
2527 Male, age 74, both hemispheres 17.2
2082 Female, age 91, right hemisphere 14.9
Hippocampus, CA2
nTPM: 17.7
1892 Male, age 76, both hemispheres 19.1
1963 Male, age 80, left hemisphere 18.8
2249 Male, age 74, both hemispheres 18.2
1940 Female, age 85, left hemisphere 17.9
2437 Female, age 94, left hemisphere 16.5
2113 Female, age 91, right hemisphere 15.7
Hippocampus, CA3
nTPM: 17.9
1867 Male, age 76, both hemispheres 21.4
2436 Male, age 74, both hemispheres 18.4
2137 Male, age 80, left hemisphere 17.8
1891 Female, age 85, both hemispheres 17.5
2861 Female, age 67, both hemispheres 16.1
2620 Female, age 94, left hemisphere 15.9
Parahippocampal cortex
nTPM: 16.4
2018 Male, age 76, both hemispheres 18.6
1933 Female, age 85, both hemispheres 17.0
2245 Female, age 91, both hemispheres 16.9
2250 Female, age 67, right hemisphere 16.6
2532 Female, age 72, left hemisphere 16.5
1990 Female, age 91, right hemisphere 16.4
1850 Male, age 80, both hemispheres 16.2
2693 Female, age 94, both hemispheres 15.4
2692 Male, age 74, both hemispheres 15.3
2622 Female, age 67, right hemisphere 14.8
Perirhinal gyrus
nTPM: 16.2
1841 Female, age 85, right hemisphere 17.5
1847 Female, age 91, left hemisphere 16.8
2521 Female, age 94, right hemisphere 16.3
1794 Male, age 80, right hemisphere 15.4
2848 Male, age 76, right hemisphere 15.1
Subiculum
nTPM: 17.4
2042 Male, age 76, both hemispheres 19.8
1901 Male, age 80, both hemispheres 18.3
2438 Female, age 94, left hemisphere 17.9
1977 Female, age 85, both hemispheres 16.9
2619 Male, age 74, both hemispheres 15.8
2729 Female, age 91, right hemisphere 15.8

HIPPOCAMPAL FORMATION - GTEx RNA-seqi
Average nTPM 23.3
GTEx sample id Sample description nTPM
Brain - Hippocampus
Average nTPM: 23.3
Samples: 197

Max nTPM: 88.4
Min nTPM: 11.6
Std nTPM: 8.5
Median nTPM: 21.7
GTEX-1CB4J-0011-R1a-SM-9WG64 60-69 years, male 88.4
GTEX-13OVJ-0011-R1b-SM-5L3I6 50-59 years, female 70.4
GTEX-12WSH-0011-R1a-SM-5GU5V 50-59 years, male 53.8
GTEX-11TUW-0011-R1a-SM-DO92S 60-69 years, male 50.1
GTEX-1HSMO-0011-R1a-SM-CM2SV 60-69 years, male 43.8
GTEX-NPJ8-0011-R1a-SM-33HCB 40-49 years, male 39.2
GTEX-1EX96-0011-R1a-SM-CE6R5 50-59 years, male 37.0
GTEX-14LZ3-0011-R1a-SM-69LP5 60-69 years, female 35.4
GTEX-13JUV-0011-R1a-SM-5LZY4 40-49 years, female 35.2
GTEX-13NZA-0011-R1b-SM-5LUAF 60-69 years, male 34.3
GTEX-1A32A-0011-R1a-SM-7P8SQ 50-59 years, female 34.3
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HIPPOCAMPAL FORMATION - FANTOM5 CAGEi
Max Scaled Tags Per Million 48.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Hippocampus
Scaled Tags Per Million: 48.6
FF:10169-103B7 60 years, female 49.1
FF:10153-102I9 76 years, female 48.0

HIPPOCAMPAL FORMATION - Pig RNA-seqi
Average nTPM 5.7
Pig sample Sample description nTPM
Dorsal hippocampus
nTPM: 5.5
Samples: 4

Max nTPM: 6.2
Min nTPM: 5.1
Sample A Female 6.2
Sample B Female 5.1
Sample C Male 5.2
Sample D Male 5.5
Entorhinal cortex
nTPM: 5.7
Samples: 4

Max nTPM: 6.3
Min nTPM: 5.1
Sample A Female 6.2
Sample B Female 6.3
Sample C Male 5.1
Sample D Male 5.2
Subiculum
nTPM: 5.5
Samples: 4

Max nTPM: 6.5
Min nTPM: 4.9
Sample A Female 6.5
Sample B Female 4.9
Sample C Male 5.0
Sample D Male 5.5
Ventral hippocampus
nTPM: 5.2
Samples: 4

Max nTPM: 5.8
Min nTPM: 4.4
Sample A Female 5.6
Sample B Female 4.4
Sample C Male 5.1
Sample D Male 5.8

HIPPOCAMPAL FORMATION - Mouse RNA-seqi
Average nTPM 50.4
Mouse sample Sample description nTPM
Entorhinal cortex
nTPM: 49.5
Samples: 4

Max nTPM: 52.5
Min nTPM: 46.3
Sample A Male 46.3
Sample B Male 47.4
Sample C Female 51.9
Sample D Female 52.5
Hippocampal formation
nTPM: 50.4
Samples: 4

Max nTPM: 53.7
Min nTPM: 46.3
Sample A Male 46.3
Sample B Male 48.0
Sample C Female 53.6
Sample D Female 53.7

HIPPOCAMPAL FORMATION - Allen Mouse ISHi
Max Expression energy 3.0
Allen experiment id Experiment description Expression energy
Hippocampal formation
Expression energy: 3.0
686194 Antisense, RP_040916_01_A02, Mouse strain C57BL/6J (56 days, male) 3.0

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