MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:19.1 nTPM
HPA:19.1 nTPM
GTEx:11.6 nTPM
FANTOM5:35.0 Scaled Tags Per Million
Pig:11.1 nTPM
Mouse:20.2 nTPM
Allen mouse:1.9 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 19.1
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 14.9
2586 Male, age 75, left hemisphere 23.0
2019 Male, age 18, unknown 15.2
2411 Female, age 72, unknown 15.1
2219 Male, age 76, both hemispheres 14.7
1827 Male, age 72, unknown 14.6
1830 Male, age 51, unknown 14.1
2666 Male, age 74, left hemisphere 14.0
2828 Female, age 72, unknown 13.4
1833 Male, age 53, unknown 13.0
1870 Female, age 42, unknown 11.5
Dorsal raphe nucleus
nTPM: 13.2
2047 Male, age 72, unknown 17.3
2750 Male, age 76, both hemispheres 15.2
2298 Female, age 72, unknown 12.6
1828 Male, age 53, unknown 10.6
2016 Female, age 72, unknown 10.2
Inferior colliculus
nTPM: 12.0
2849 Male, age 72, unknown 13.0
1848 Female, age 42, unknown 12.1
2097 Female, age 72, unknown 11.6
1890 Male, age 53, unknown 11.4
Median raphe nucleus
nTPM: 19.1
2220 Male, age 76, midline 19.1
Pedunculopontine tegmental nucleus
nTPM: 14.8
2338 Male, age 61, both hemispheres 17.4
2334 Male, age 80, both hemispheres 13.6
1921 Female, age 85, both hemispheres 13.4
Periaquaductal grey, anterior
nTPM: 18.0
1795 Male, age 51, unknown 19.5
2502 Female, age 75, unknown 18.9
1947 Male, age 18, unknown 15.6
Periaquaductal grey, dorsal
nTPM: 11.3
2464 Female, age 72, unknown 14.6
1840 Male, age 53, unknown 12.0
1831 Male, age 72, unknown 10.1
2850 Male, age 76, both hemispheres 8.6
Periaquaductal grey, lateral
nTPM: 12.6
2140 Male, age 76, both hemispheres 14.0
2272 Male, age 74, both hemispheres 13.4
2053 Male, age 18, unknown 10.5
Pretectal area
nTPM: 13.9
1816 Male, age 51, unknown 17.1
1944 Female, age 72, unknown 16.9
2007 Male, age 72, unknown 16.1
2407 Male, age 75, both hemispheres 15.7
2825 Male, age 18, unknown 15.1
1817 Female, age 42, unknown 14.9
1815 Male, age 53, unknown 14.8
2316 Male, age 76, right hemisphere 13.2
2224 Female, age 72, unknown 12.2
2667 Female, age 75, unknown 8.5
2273 Male, age 74, both hemispheres 8.1
Red nucleus
nTPM: 13.1
2584 Male, age 75, left hemisphere 20.7
2588 Male, age 74, left hemisphere 17.4
2785 Male, age 18, unknown 14.6
2725 Female, age 75, unknown 13.3
2503 Female, age 72, unknown 13.1
1865 Male, age 51, unknown 12.8
2227 Male, age 72, unknown 12.3
2769 Male, age 72, unknown 12.0
2823 Male, age 76, right hemisphere 11.3
1904 Male, age 53, unknown 11.2
1954 Female, age 42, unknown 9.7
1821 Female, age 72, unknown 8.6
Substantia nigra
nTPM: 15.6
1941 Male, age 53, unknown 18.8
1916 Female, age 42, unknown 18.0
2665 Male, age 74, both hemispheres 17.8
2583 Male, age 75, right hemisphere 16.7
2590 Female, age 75, unknown 15.9
2241 Male, age 72, unknown 15.1
2409 Female, age 72, unknown 14.8
1851 Male, age 51, unknown 13.6
2699 Male, age 18, unknown 12.9
1889 Female, age 72, unknown 12.1
Superior colliculus
nTPM: 14.8
2668 Female, age 75, unknown 19.3
2261 Male, age 18, unknown 18.4
2087 Female, age 72, unknown 17.2
2664 Male, age 75, both hemispheres 17.2
1913 Female, age 42, unknown 15.0
1796 Male, age 53, unknown 14.9
1839 Male, age 51, unknown 12.5
2587 Male, age 74, left hemisphere 12.4
1995 Male, age 72, unknown 10.7
1895 Male, age 76, right hemisphere 10.3
Ventral tegmental area
nTPM: 14.8
2021 Male, age 53, unknown 16.7
2410 Female, age 72, unknown 15.9
2218 Male, age 76, both hemispheres 15.2
1942 Male, age 51, unknown 14.9
2223 Female, age 72, unknown 13.4
1915 Female, age 42, unknown 12.9

MIDBRAIN - GTEx RNA-seqi
Average nTPM 11.6
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 11.6
Samples: 139

Max nTPM: 20.9
Min nTPM: 6.8
Std nTPM: 2.1
Median nTPM: 11.5
GTEX-OXRO-0011-R2A-SM-3NB1W 60-69 years, female 20.9
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 18.4
GTEX-ZE9C-0011-R2a-SM-4WKGH 60-69 years, male 16.4
GTEX-12WSD-0011-R2a-SM-5LZWB 60-69 years, female 16.0
GTEX-13PDP-0011-R2b-SM-5O9DH 60-69 years, male 15.8
GTEX-ZDXO-0011-R2b-SM-4WKFG 60-69 years, male 15.5
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 15.4
GTEX-1IKOH-0011-R2a-SM-CMKHO 60-69 years, female 15.3
GTEX-147GR-0011-R2b-SM-5S2RQ 60-69 years, male 15.0
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 14.9
GTEX-1LB8K-0011-R2a-SM-EZ6MQ 50-59 years, male 14.9
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 35.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 35.0
FF:10158-103A5 76 years, female 35.0

MIDBRAIN - Pig RNA-seqi
Average nTPM 11.1
Pig sample Sample description nTPM
Midbrain
nTPM: 10.7
Samples: 4

Max nTPM: 13.6
Min nTPM: 9.1
Sample A Female 9.5
Sample B Female 9.1
Sample C Male 13.6
Sample D Male 10.6
Periaqueductal gray
nTPM: 8.8
Samples: 3

Max nTPM: 9.5
Min nTPM: 8.0
Sample B Female 8.9
Sample C Male 9.5
Sample D Male 8.0
Substantia nigra
nTPM: 10.5
Samples: 4

Max nTPM: 12.3
Min nTPM: 8.7
Sample A Female 11.8
Sample B Female 9.0
Sample C Male 12.3
Sample D Male 8.7
Superior colliculi
nTPM: 11.1
Samples: 4

Max nTPM: 13.1
Min nTPM: 9.1
Sample A Female 10.9
Sample B Female 9.1
Sample C Male 13.1
Sample D Male 11.3

MIDBRAIN - Mouse RNA-seqi
Average nTPM 20.2
Mouse sample Sample description nTPM
Midbrain
nTPM: 20.2
Samples: 4

Max nTPM: 21.9
Min nTPM: 18.1
Sample A Male 18.1
Sample B Male 19.8
Sample C Female 21.9
Sample D Female 20.9

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 1.9
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 1.9
68799131 Antisense, RP_050217_02_B03, Mouse strain C57BL/6J (56 days, male) 1.9

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.