MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:68.6 nTPM
HPA:68.6 nTPM
GTEx:72.7 nTPM
FANTOM5:183.9 Scaled Tags Per Million
Pig:74.7 nTPM
Mouse:61.5 nTPM
Allen mouse:5.8 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 68.6
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 62.3
1827 Male, age 72, unknown 70.2
2666 Male, age 74, left hemisphere 69.4
2411 Female, age 72, unknown 66.0
2019 Male, age 18, unknown 64.2
2828 Female, age 72, unknown 62.5
1870 Female, age 42, unknown 62.0
2586 Male, age 75, left hemisphere 61.7
1833 Male, age 53, unknown 58.3
1830 Male, age 51, unknown 54.9
2219 Male, age 76, both hemispheres 54.0
Dorsal raphe nucleus
nTPM: 63.7
2298 Female, age 72, unknown 73.2
2047 Male, age 72, unknown 66.0
1828 Male, age 53, unknown 63.8
2750 Male, age 76, both hemispheres 63.6
2016 Female, age 72, unknown 52.2
Inferior colliculus
nTPM: 61.5
2097 Female, age 72, unknown 67.5
1848 Female, age 42, unknown 61.2
2849 Male, age 72, unknown 59.0
1890 Male, age 53, unknown 58.2
Median raphe nucleus
nTPM: 64.7
2220 Male, age 76, midline 64.7
Pedunculopontine tegmental nucleus
nTPM: 59.7
2334 Male, age 80, both hemispheres 65.8
1921 Female, age 85, both hemispheres 62.6
2338 Male, age 61, both hemispheres 50.7
Periaquaductal grey, anterior
nTPM: 65.1
1947 Male, age 18, unknown 70.5
1795 Male, age 51, unknown 63.5
2502 Female, age 75, unknown 61.2
Periaquaductal grey, dorsal
nTPM: 55.7
2850 Male, age 76, both hemispheres 57.7
1840 Male, age 53, unknown 57.6
1831 Male, age 72, unknown 55.5
2464 Female, age 72, unknown 52.1
Periaquaductal grey, lateral
nTPM: 56.7
2272 Male, age 74, both hemispheres 58.0
2053 Male, age 18, unknown 57.1
2140 Male, age 76, both hemispheres 54.9
Pretectal area
nTPM: 66.4
1816 Male, age 51, unknown 78.3
1944 Female, age 72, unknown 77.6
2007 Male, age 72, unknown 76.0
1817 Female, age 42, unknown 75.0
1815 Male, age 53, unknown 68.9
2667 Female, age 75, unknown 68.4
2273 Male, age 74, both hemispheres 60.2
2224 Female, age 72, unknown 59.8
2825 Male, age 18, unknown 59.6
2407 Male, age 75, both hemispheres 54.1
2316 Male, age 76, right hemisphere 52.4
Red nucleus
nTPM: 62.5
1821 Female, age 72, unknown 74.7
2725 Female, age 75, unknown 72.2
2503 Female, age 72, unknown 63.4
1954 Female, age 42, unknown 63.3
2785 Male, age 18, unknown 62.9
1865 Male, age 51, unknown 60.6
2584 Male, age 75, left hemisphere 60.2
2588 Male, age 74, left hemisphere 59.8
2769 Male, age 72, unknown 58.6
1904 Male, age 53, unknown 58.5
2227 Male, age 72, unknown 57.7
2823 Male, age 76, right hemisphere 57.6
Substantia nigra
nTPM: 68.6
1916 Female, age 42, unknown 82.7
1889 Female, age 72, unknown 78.5
1941 Male, age 53, unknown 77.3
1851 Male, age 51, unknown 74.4
2241 Male, age 72, unknown 67.4
2409 Female, age 72, unknown 65.0
2583 Male, age 75, right hemisphere 63.2
2699 Male, age 18, unknown 60.8
2590 Female, age 75, unknown 59.5
2665 Male, age 74, both hemispheres 57.4
Superior colliculus
nTPM: 60.1
1796 Male, age 53, unknown 67.5
2087 Female, age 72, unknown 66.1
2261 Male, age 18, unknown 64.0
1895 Male, age 76, right hemisphere 62.6
2587 Male, age 74, left hemisphere 62.6
2668 Female, age 75, unknown 59.8
1839 Male, age 51, unknown 59.5
1913 Female, age 42, unknown 58.8
1995 Male, age 72, unknown 53.2
2664 Male, age 75, both hemispheres 47.0
Ventral tegmental area
nTPM: 63.2
2410 Female, age 72, unknown 77.4
1915 Female, age 42, unknown 69.0
2218 Male, age 76, both hemispheres 64.5
1942 Male, age 51, unknown 57.8
2223 Female, age 72, unknown 57.1
2021 Male, age 53, unknown 53.4

MIDBRAIN - GTEx RNA-seqi
Average nTPM 72.7
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 72.7
Samples: 139

Max nTPM: 163.0
Min nTPM: 45.6
Std nTPM: 18.0
Median nTPM: 67.8
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 163.0
GTEX-13NYS-0011-R2b-SM-5MR4G 60-69 years, male 141.3
GTEX-X4XX-0011-R2A-SM-3P623 60-69 years, male 136.6
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 118.7
GTEX-Q2AG-0011-R2A-SM-2HMIT 40-49 years, female 114.9
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 112.3
GTEX-N7MS-0011-R2a-SM-2HML6 60-69 years, male 109.3
GTEX-X585-0011-R2B-SM-46MVF 50-59 years, male 103.5
GTEX-14C5O-0011-R2a-SM-5ZZV2 60-69 years, male 100.7
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 99.6
GTEX-13NYB-0011-R2a-SM-5MR3C 40-49 years, male 98.6
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 183.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 183.9
FF:10158-103A5 76 years, female 183.9

MIDBRAIN - Pig RNA-seqi
Average nTPM 74.7
Pig sample Sample description nTPM
Midbrain
nTPM: 74.8
Samples: 4

Max nTPM: 91.0
Min nTPM: 58.6
Sample A Female 77.2
Sample B Female 58.6
Sample C Male 91.0
Sample D Male 72.2
Periaqueductal gray
nTPM: 55.6
Samples: 3

Max nTPM: 64.7
Min nTPM: 47.7
Sample B Female 54.5
Sample C Male 64.7
Sample D Male 47.7
Substantia nigra
nTPM: 64.5
Samples: 4

Max nTPM: 81.3
Min nTPM: 47.5
Sample A Female 79.6
Sample B Female 47.5
Sample C Male 81.3
Sample D Male 49.4
Superior colliculi
nTPM: 73.2
Samples: 4

Max nTPM: 92.9
Min nTPM: 49.9
Sample A Female 76.0
Sample B Female 49.9
Sample C Male 92.9
Sample D Male 74.1

MIDBRAIN - Mouse RNA-seqi
Average nTPM 61.5
Mouse sample Sample description nTPM
Midbrain
nTPM: 61.5
Samples: 4

Max nTPM: 64.2
Min nTPM: 59.4
Sample A Male 59.4
Sample B Male 60.9
Sample C Female 64.2
Sample D Female 61.5

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 5.8
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 5.8
74641317 Antisense, RP_060220_02_E05, Mouse strain C57BL/6J (56 days, male) 13.6
68638101 Antisense, RP_050126_02_C02, Mouse strain C57BL/6J (56 days, male) 3.8
71496988 Antisense, RP_050913_04_H04, Mouse strain C57BL/6J (56 days, male) 0.0

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.