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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:71.9 nTPM
HPA:71.9 nTPM
GTEx:46.3 nTPM
FANTOM5:93.0 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA044849
Glandular cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 71.9
overview
Male, age 65
Small intestine sample 232
nTPM: 78.9
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 62.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 59.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 86.3

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 46.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 46.3
Samples: 187

Max nTPM: 126.9
Min nTPM: 15.4
Std nTPM: 17.3
Median nTPM: 45.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 126.9
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 85.7
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 84.4
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 82.8
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 82.2
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 81.9
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 79.2
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 78.8
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 75.5
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 75.0
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 73.6
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 72.9
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 71.6
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 71.2
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 71.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 70.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 70.4
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 69.9
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 69.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 68.6
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 68.4
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 67.9
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 66.3
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 66.1
GTEX-YFCO-1326-SM-664NV 40-49 years, male 65.8
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 65.0
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 65.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 64.7
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 64.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 64.0
GTEX-1122O-1326-SM-5H11F 60-69 years, female 63.7
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 63.6
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 62.8
GTEX-111YS-1426-SM-5GID8 60-69 years, male 62.3
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 62.0
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 61.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 61.7
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 61.7
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 60.8
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 60.5
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 60.2
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 60.2
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 59.9
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 59.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 58.8
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 57.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 57.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 57.0
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 56.6
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 56.1
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 56.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 55.9
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 55.6
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 55.3
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 55.2
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 54.8
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 54.6
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 54.4
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 54.4
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 54.4
GTEX-13113-1226-SM-5EGHT 60-69 years, female 54.2
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 53.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 53.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 53.4
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 53.3
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 53.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 52.7
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 52.5
GTEX-14PKU-1626-SM-6871C 40-49 years, female 52.4
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 52.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 52.3
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 52.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 51.8
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 51.0
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 50.7
GTEX-ZTSS-0926-SM-59865 40-49 years, male 50.4
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 49.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 49.1
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 48.9
GTEX-13111-1426-SM-5DUW3 50-59 years, male 47.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 47.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 47.5
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 47.5
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 46.8
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 46.5
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 46.5
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 46.3
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 46.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 45.6
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 45.5
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 45.5
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 45.5
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 45.4
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 45.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 44.6
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 44.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 43.9
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 43.3
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 43.3
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 43.0
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 43.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 42.9
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 42.2
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 42.2
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 42.1
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 41.9
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 41.7
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 41.4
GTEX-13O61-1326-SM-5KM31 60-69 years, male 41.0
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 39.8
GTEX-1C475-1426-SM-793CH 40-49 years, female 39.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 39.3
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 39.3
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 38.7
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 38.7
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 37.9
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 37.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 37.6
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 37.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 37.1
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 37.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 36.8
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 36.7
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 36.6
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 36.4
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 36.0
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 35.9
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 35.8
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 35.7
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 35.6
GTEX-14PK6-1626-SM-6871I 70-79 years, female 35.4
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 35.2
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 34.9
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 34.9
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 34.8
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 34.5
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 34.4
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 34.3
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 34.2
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 33.9
GTEX-1192X-2526-SM-59868 50-59 years, male 33.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 33.6
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 32.9
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 32.4
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 32.4
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 32.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 32.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 31.8
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 31.4
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 31.2
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 30.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 30.0
GTEX-183FY-1626-SM-793D8 20-29 years, male 29.7
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 29.4
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 29.2
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 29.1
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 28.7
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 28.3
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 27.8
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 27.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 27.7
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 27.4
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 26.7
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 26.7
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 26.6
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 25.8
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 25.8
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 25.4
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 25.1
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 24.3
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 23.3
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 23.1
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 23.0
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 22.3
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 22.1
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 21.9
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 21.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 21.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 20.2
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 20.1
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 19.6
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 19.6
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 19.1
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 18.2
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 18.0
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 17.2
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 15.4
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 93.0
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 93.0
FF:10024-101D6 15,40,85 years, mixed 93.0

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