MIDBRAIN - Expression summary
Protein profiling
Multiplex tissuei
Protein expressioni No data
RNA expressioni
Consensus:47.2 nTPM
HPA:47.2 nTPM
GTEx:48.2 nTPM
FANTOM5:110.5 Scaled Tags Per Million
Pig:58.1 nTPM
Mouse:116.6 nTPM
Allen mouse:9.4 Expression energy

MIDBRAIN - HPA Brain RNA-seq
Max nTPM 47.2
Sample id Sample description nTPM
Cuneiform nucleus
nTPM: 43.1
2019 Male, age 18, unknown 46.2
1870 Female, age 42, unknown 44.7
2411 Female, age 72, unknown 44.6
2666 Male, age 74, left hemisphere 44.1
1830 Male, age 51, unknown 43.6
1827 Male, age 72, unknown 43.0
1833 Male, age 53, unknown 42.6
2219 Male, age 76, both hemispheres 41.2
2828 Female, age 72, unknown 40.8
2586 Male, age 75, left hemisphere 40.3
Dorsal raphe nucleus
nTPM: 44.6
2047 Male, age 72, unknown 46.8
1828 Male, age 53, unknown 45.5
2750 Male, age 76, both hemispheres 44.4
2298 Female, age 72, unknown 43.4
2016 Female, age 72, unknown 42.7
Inferior colliculus
nTPM: 43.3
2097 Female, age 72, unknown 44.6
1848 Female, age 42, unknown 43.5
1890 Male, age 53, unknown 42.7
2849 Male, age 72, unknown 42.4
Median raphe nucleus
nTPM: 44.6
2220 Male, age 76, midline 44.6
Pedunculopontine tegmental nucleus
nTPM: 45.1
2334 Male, age 80, both hemispheres 45.8
1921 Female, age 85, both hemispheres 44.9
2338 Male, age 61, both hemispheres 44.5
Periaquaductal grey, anterior
nTPM: 44.0
2502 Female, age 75, unknown 45.9
1947 Male, age 18, unknown 45.0
1795 Male, age 51, unknown 41.0
Periaquaductal grey, dorsal
nTPM: 42.1
1840 Male, age 53, unknown 42.9
2464 Female, age 72, unknown 42.2
2850 Male, age 76, both hemispheres 41.8
1831 Male, age 72, unknown 41.5
Periaquaductal grey, lateral
nTPM: 40.5
2272 Male, age 74, both hemispheres 41.6
2053 Male, age 18, unknown 41.3
2140 Male, age 76, both hemispheres 38.6
Pretectal area
nTPM: 45.0
1944 Female, age 72, unknown 49.0
1817 Female, age 42, unknown 48.3
1816 Male, age 51, unknown 48.1
2007 Male, age 72, unknown 47.1
1815 Male, age 53, unknown 45.6
2224 Female, age 72, unknown 44.0
2667 Female, age 75, unknown 44.0
2407 Male, age 75, both hemispheres 43.2
2273 Male, age 74, both hemispheres 43.0
2316 Male, age 76, right hemisphere 41.8
2825 Male, age 18, unknown 40.7
Red nucleus
nTPM: 43.9
1821 Female, age 72, unknown 47.2
2725 Female, age 75, unknown 46.3
2823 Male, age 76, right hemisphere 45.3
2588 Male, age 74, left hemisphere 44.4
1865 Male, age 51, unknown 44.1
2785 Male, age 18, unknown 44.1
2584 Male, age 75, left hemisphere 44.0
1954 Female, age 42, unknown 43.5
1904 Male, age 53, unknown 43.3
2503 Female, age 72, unknown 42.9
2227 Male, age 72, unknown 41.2
2769 Male, age 72, unknown 40.9
Substantia nigra
nTPM: 47.2
2241 Male, age 72, unknown 53.8
1941 Male, age 53, unknown 49.4
2409 Female, age 72, unknown 49.4
1889 Female, age 72, unknown 49.2
1916 Female, age 42, unknown 49.2
1851 Male, age 51, unknown 48.5
2699 Male, age 18, unknown 45.0
2665 Male, age 74, both hemispheres 43.1
2590 Female, age 75, unknown 42.9
2583 Male, age 75, right hemisphere 41.7
Superior colliculus
nTPM: 43.0
2587 Male, age 74, left hemisphere 46.8
2087 Female, age 72, unknown 45.0
1895 Male, age 76, right hemisphere 44.5
2261 Male, age 18, unknown 43.6
1913 Female, age 42, unknown 43.2
2668 Female, age 75, unknown 43.2
1796 Male, age 53, unknown 42.7
1839 Male, age 51, unknown 42.5
1995 Male, age 72, unknown 41.3
2664 Male, age 75, both hemispheres 37.6
Ventral tegmental area
nTPM: 45.8
2410 Female, age 72, unknown 51.4
1915 Female, age 42, unknown 46.7
2223 Female, age 72, unknown 45.0
2218 Male, age 76, both hemispheres 44.7
1942 Male, age 51, unknown 44.0
2021 Male, age 53, unknown 43.0

MIDBRAIN - GTEx RNA-seqi
Average nTPM 48.2
GTEx sample id Sample description nTPM
Brain - Substantia nigra
Average nTPM: 48.2
Samples: 139

Max nTPM: 87.5
Min nTPM: 25.7
Std nTPM: 11.1
Median nTPM: 45.3
GTEX-Z93S-0011-R2a-SM-4RGNG 50-59 years, male 87.5
GTEX-1B8L1-0011-R2a-SM-9OSVL 60-69 years, male 83.9
GTEX-1EMGI-0011-R2b-SM-9OSVS 60-69 years, male 79.5
GTEX-14BIM-0011-R2b-SM-69LQ6 60-69 years, female 74.8
GTEX-15ER7-0011-R2a-SM-6M46O 20-29 years, female 74.0
GTEX-1H1ZS-0011-R2b-SM-CL54Q 70-79 years, male 72.5
GTEX-11DZ1-0011-R2a-SM-DNZZM 50-59 years, male 71.0
GTEX-1313W-0011-R2a-SM-5EGLF 50-59 years, female 70.1
GTEX-12ZZX-0011-R2a-SM-5EGLG 40-49 years, female 68.8
GTEX-1B933-0011-R2b-SM-7IGNM 50-59 years, female 68.4
GTEX-1LVA9-0011-R2a-SM-EZ6MJ 50-59 years, male 67.0
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MIDBRAIN - FANTOM5 CAGEi
Max Scaled Tags Per Million 110.5
FANTOM5 sample id Sample description Scaled Tags Per Million
Substantia nigra
Scaled Tags Per Million: 110.5
FF:10158-103A5 76 years, female 110.5

MIDBRAIN - Pig RNA-seqi
Average nTPM 58.1
Pig sample Sample description nTPM
Midbrain
nTPM: 58.1
Samples: 4

Max nTPM: 63.8
Min nTPM: 53.1
Sample A Female 55.7
Sample B Female 53.1
Sample C Male 63.8
Sample D Male 59.6
Periaqueductal gray
nTPM: 48.9
Samples: 3

Max nTPM: 58.1
Min nTPM: 43.0
Sample B Female 43.0
Sample C Male 58.1
Sample D Male 45.5
Substantia nigra
nTPM: 53.0
Samples: 4

Max nTPM: 69.5
Min nTPM: 37.4
Sample A Female 69.5
Sample B Female 43.5
Sample C Male 61.4
Sample D Male 37.4
Superior colliculi
nTPM: 54.4
Samples: 4

Max nTPM: 61.9
Min nTPM: 41.2
Sample A Female 61.9
Sample B Female 41.2
Sample C Male 60.5
Sample D Male 53.8

MIDBRAIN - Mouse RNA-seqi
Average nTPM 116.6
Mouse sample Sample description nTPM
Midbrain
nTPM: 116.6
Samples: 4

Max nTPM: 121.7
Min nTPM: 112.9
Sample A Male 112.9
Sample B Male 121.7
Sample C Female 114.6
Sample D Female 117.2

MIDBRAIN - Allen Mouse ISHi
Max Expression energy 9.4
Allen experiment id Experiment description Expression energy
Midbrain
Expression energy: 9.4
69117056 Antisense, RP_050321_01_F09, Mouse strain C57BL/6J (56 days, male) 9.4

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The Human Protein Atlas

The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.