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The Survival Scatter plot shows the clinical status (i.e. dead or alive) for all individuals in the patient cohort, based on the same data that underlies the corresponding Kaplan-Meier plots. Patients that are alive at last time for follow-up are shown in blue and patients who have died during the study are shown in red.
The x-axis shows the expression levels (FPKM) of the investigated gene in the tumor tissue at the time of diagnosis. The y-axis shows the follow-up time after diagnosis (years). Both axes are complimented with kernel density curves demonstrating the data density over the axes. The top density plot shows the expression levels (FPKM) distribution among dead (red) and alive patients (blue). The right density plot shows the data density of the survived years of dead patients with high and low expression levels respectively, stratified using the cutoff indicated by the vertical dashed line through the Survival Scatter plot. This cutoff is automatically defined based on the FPKM cutoff that minimizes the p-score. The cutoff can be changed by dragging the vertical line or by entering a cutoff value in the square labeled "Current cut-off".
Under the Survival Scatter plot the p-score landscape (black curve; left axis) is shown together with dead median separation (red curve; right axis). Dead median separation is the difference in median mRNA expression between patients who have died with high and low expression, respectively. It is calculated as follows: median FPKM expression of dead patients with high expression - median FPKM expression of dead patients with low expression. This is intended to aid the user in visually exploring custom cutoffs and the associated p-scores and dead median separation.
Individual patient data is displayed and can be filtered by clicking on one or more of the category buttons on the top of the page. Categories describing expression level and patient information include: high, low, alive, dead, female, male and tumor stages. The scale of the x-axis can be toggled between linear and log-scale by clicking on the "x log" button. Mouse-over function shows TCGA ID, patient information and mRNA expression (FPKM) for each patient.
& Survival analysisi
Kaplan-Meier plots summarize results from analysis of correlation between mRNA expression level and patient survival. Patients were divided based on level of expression into one of the two groups "low" (under cut off) or "high" (over cut off). X-axis shows time for survival (years) and y-axis shows the probability of survival, where 1.0 corresponds to 100 percent.
Current cut-off shows the cut-off (FPKM) currently selected. It may be changed manually. When the current cut-off is changed, the vertical dashed line indicating cut-off, the interactive survival scatter plot and the Kaplan-Meier curve will be automatically adjusted to show results accordingly.
:
Best expression cut offi
Based on the FPKM value of each gene, patients were classified into two groups and association between prognosis (survival) and gene expression (FPKM) was examined. The best expression cut-off refers the FPKM value that yields maximal difference with regard to survival between the two groups at the lowest log-rank P-value. Best expression cut-off was selected based on survival analysis .
When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the best expression cut-off.
Median expression refers to the median FPKM value calculated based on the gene expression (FPKM) data from all patients in this dataset. When clicking on this number, the vertical dashed line indicating cut-off, the interactive survival plot, and the Kaplan-Meier curve will be adjusted to show results based on the median expression.
Median follow up time refers to the median time (years) after diagnosis with this type of cancer, based on clinical data from all patients in this dataset.
: N/A
P scorei
Log-rank P value for Kaplan-Meier plot showing results from analysis of correlation between mRNA expression level and patient survival.
N/A
5-year survival highi
5-year survival for patients with higher expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
5-year survival lowi
5-year survival for patients with lower expression than the expression cutoff.
For melanoma and glioma, 3-year survival is shown.
N/A
TCGA RNA samplesi
RNA-seq data is reported as average FPKM (number Fragments Per Kilobase of exon per Million reads), generated by the The Cancer Genome Atlas (TCGA) .
Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. FPKM values of the individual samples are presented next to the box plot.
Average FPKM
783.0
Number of samples
365
Samples
Sample
Description
FPKM
TCGA-BC-A5W4-01A
69 years, male, white, stage:iiia, dead, 547 days
4027.6
TCGA-DD-A3A2-01A
76 years, female, white, stage:i, dead, 2131 days
3675.0
TCGA-5C-AAPD-01A
61 years, male, asian, stage:ii, alive, 20 days
3560.4
TCGA-DD-A73C-01A
65 years, female, white, stage:iiia, alive, 701 days
3384.9
TCGA-DD-A1EJ-01A
71 years, female, white, stage:iiic, dead, 1005 days
2695.9
TCGA-G3-A5SI-01A
44 years, male, asian, stage:ii, dead, 768 days
2628.1
TCGA-DD-A1EB-01A
72 years, female, stage:i, alive, 2017 days
2581.7
TCGA-G3-A25U-01A
63 years, female, asian, stage:i, alive, 1636 days
2550.0
TCGA-DD-AACV-01A
53 years, male, asian, stage:i, alive, 1531 days
2374.7
TCGA-DD-AADO-01A
55 years, male, asian, stage:i, alive, 453 days
2170.8
TCGA-CC-A7IK-01A
59 years, male, asian, stage:iiia, dead, 262 days
2146.7
TCGA-NI-A4U2-01A
71 years, male, white, stage:iiia, dead, 1791 days
2124.4
TCGA-ED-A7XO-01A
29 years, male, asian, stage:iiia, alive, 427 days
1997.9
TCGA-2Y-A9GZ-01A
82 years, female, white, stage:ii, dead, 848 days
1988.4
TCGA-G3-AAV0-01A
58 years, male, asian, stage:i, alive, 476 days
1971.4
TCGA-2Y-A9GU-01A
55 years, female, white, stage:i, alive, 1939 days
1927.2
TCGA-CC-A7IE-01A
57 years, male, asian, stage:iiia, dead, 217 days
1900.1
TCGA-DD-A73B-01A
72 years, female, white, stage:i, dead, 283 days
1890.6
TCGA-DD-A4NI-01A
67 years, male, white, stage:ii, alive, 816 days
1887.2
TCGA-DD-AADK-01A
68 years, female, asian, stage:ii, alive, 1049 days
1806.6
TCGA-DD-AADS-01A
63 years, male, asian, stage:i, alive, 474 days
1800.6
TCGA-DD-AAVP-01A
48 years, male, asian, stage:i, alive, 2752 days
1791.0
TCGA-K7-A5RF-01A
64 years, male, white, stage:i, alive, 631 days
1743.8
TCGA-DD-AACF-01A
68 years, male, asian, stage:i, dead, 365 days
1743.0
TCGA-ZS-A9CE-01A
79 years, female, white, stage:ii, alive, 1241 days
1721.0
TCGA-ZP-A9D0-01A
67 years, female, black or african american, alive, 1091 days
1718.4
TCGA-RC-A7SB-01A
53 years, male, asian, stage:ii, alive, 588 days
1671.0
TCGA-CC-A123-01A
24 years, female, asian, stage:iiia, alive, 219 days
1653.4
TCGA-DD-AAD0-01A
73 years, female, asian, stage:i, alive, 137 days
1640.6
TCGA-ED-A7PZ-01A
61 years, male, asian, stage:ii, alive, 6 days
1598.5
TCGA-ES-A2HS-01A
80 years, male, white, stage:i, dead, 688 days
1592.1
TCGA-DD-A11A-01A
67 years, male, black or african american, stage:i, alive, 79 days
1561.1
TCGA-ED-A8O6-01A
50 years, female, asian, stage:iiia, dead, 56 days
1545.5
TCGA-G3-A5SK-01A
58 years, male, white, stage:i, alive, 744 days
1528.6
TCGA-G3-A7M5-01A
76 years, male, asian, stage:i, alive, 447 days
1503.4
TCGA-DD-A4NK-01A
80 years, female, white, stage:iiia, dead, 1210 days
1464.8
TCGA-BC-4073-01B
73 years, male, white, stage:iiia, alive, 849 days
1446.2
TCGA-DD-AACO-01A
40 years, male, asian, stage:i, alive, 1876 days
1421.9
TCGA-ZP-A9CY-01A
66 years, female, white, alive, 782 days
1408.5
TCGA-DD-A73F-01A
77 years, female, white, stage:i, alive, 1085 days
1399.0
TCGA-BC-A10U-01A
69 years, male, white, dead, 837 days
1393.0
TCGA-DD-AACP-01A
65 years, male, asian, stage:i, alive, 415 days
1391.0
TCGA-2Y-A9H8-01A
85 years, female, white, dead, 633 days
1377.3
TCGA-GJ-A6C0-01A
75 years, female, white, stage:ii, dead, 31 days
1375.5
TCGA-DD-A73E-01A
66 years, male, white, stage:i, alive, 44 days
1359.7
TCGA-2Y-A9HB-01A
66 years, male, stage:i, alive, 260 days
1350.3
TCGA-RC-A6M6-01A
75 years, male, white, stage:ii, alive, 9 days
1295.5
TCGA-MI-A75G-01A
63 years, male, white, stage:ii, alive, 698 days
1292.0
TCGA-FV-A3R2-01A
75 years, male, white, stage:i, dead, 194 days
1289.2
TCGA-DD-A11B-01A
73 years, male, white, stage:i, dead, 14 days
1287.2
TCGA-ZP-A9CZ-01A
72 years, male, asian, alive, 706 days
1281.5
TCGA-DD-AAEI-01A
72 years, male, asian, stage:i, alive, 1531 days
1278.5
TCGA-BC-A10Y-01A
76 years, male, white, dead, 711 days
1272.8
TCGA-QA-A7B7-01A
48 years, male, black or african american, stage:ii, alive, 94 days
1263.3
TCGA-UB-A7MF-01A
57 years, male, white, stage:iiia, dead, 214 days
1249.5
TCGA-RC-A7SF-01A
66 years, male, asian, stage:i, alive, 579 days
1247.6
TCGA-DD-A39Y-01A
67 years, male, asian, stage:i, dead, 171 days
1242.5
TCGA-DD-AAE3-01A
50 years, male, asian, stage:i, alive, 566 days
1242.0
TCGA-DD-A3A5-01A
66 years, female, white, stage:iii, dead, 3125 days
1239.5
TCGA-K7-A5RG-01A
66 years, male, black or african american, stage:i, alive, 519 days
1239.2
TCGA-CC-A9FW-01A
68 years, male, asian, stage:iiia, alive, 248 days
1216.5
TCGA-BW-A5NO-01A
50 years, male, black or african american, stage:iiia, alive, 20 days
1215.2
TCGA-2Y-A9GT-01A
51 years, male, white, stage:i, dead, 1624 days
1197.4
TCGA-DD-AAW1-01A
55 years, male, asian, stage:iiia, alive, 1989 days
1184.6
TCGA-MR-A520-01A
58 years, male, white, stage:i, alive, 229 days
1179.1
TCGA-DD-AACS-01A
39 years, male, asian, stage:i, alive, 1804 days
1177.0
TCGA-UB-A7MB-01A
24 years, male, white, stage:ii, alive, 601 days
1170.5
TCGA-DD-A1EF-01A
57 years, female, white, stage:i, dead, 394 days
1157.0
TCGA-DD-A118-01A
77 years, female, white, stage:ii, alive, 3437 days
1152.9
TCGA-DD-A11D-01A
57 years, female, white, stage:i, dead, 1560 days
1152.8
TCGA-DD-AADG-01A
70 years, male, asian, stage:iiia, alive, 1145 days
1143.2
TCGA-DD-AACG-01A
52 years, male, asian, stage:ii, dead, 469 days
1140.8
TCGA-HP-A5N0-01A
88 years, female, dead, 1147 days
1136.5
TCGA-DD-AACZ-01A
63 years, female, asian, stage:i, dead, 171 days
1132.9
TCGA-UB-A7ME-01A
51 years, male, asian, stage:i, alive, 486 days
1125.4
TCGA-DD-AADV-01A
50 years, male, asian, stage:i, alive, 574 days
1122.8
TCGA-DD-AAC9-01A
51 years, male, asian, stage:i, alive, 347 days
1122.5
TCGA-DD-AADD-01A
51 years, male, asian, stage:i, alive, 1231 days
1121.6
TCGA-DD-A4NN-01A
56 years, female, white, stage:i, dead, 899 days
1120.8
TCGA-UB-A7MC-01A
59 years, male, white, stage:iiia, alive, 500 days
1119.9
TCGA-DD-AADJ-01A
70 years, female, asian, stage:i, alive, 1066 days
1104.8
TCGA-DD-AAVZ-01A
38 years, male, asian, stage:i, alive, 1900 days
1103.0
TCGA-DD-AAE9-01A
69 years, male, asian, stage:i, alive, 722 days
1088.7
TCGA-FV-A496-01A
84 years, female, white, stage:i, alive, 10 days
1086.4
TCGA-DD-AADL-01A
58 years, male, asian, stage:i, alive, 636 days
1078.4
TCGA-BC-A69H-01A
64 years, male, white, stage:ii, alive, 444 days
1077.0
TCGA-G3-A7M8-01A
31 years, male, asian, stage:i, alive, 430 days
1075.7
TCGA-DD-AACC-01A
61 years, male, asian, stage:i, dead, 1685 days
1074.1
TCGA-ZS-A9CG-01A
55 years, male, white, stage:ii, alive, 341 days
1066.1
TCGA-RC-A7SK-01A
59 years, male, asian, stage:i, alive, 472 days
1065.5
TCGA-G3-A6UC-01A
65 years, male, white, stage:iiib, alive, 671 days
1058.8
TCGA-DD-AACW-01A
43 years, male, asian, stage:i, alive, 1424 days
1043.6
TCGA-DD-A116-01A
68 years, male, asian, stage:iiia, dead, 1622 days
1042.9
TCGA-DD-A3A1-01A
65 years, male, stage:iiia, dead, 233 days
1037.1
TCGA-DD-AAE1-01A
52 years, male, asian, stage:i, alive, 552 days
1035.1
TCGA-BC-A216-01A
62 years, female, white, stage:iiia, alive, 1351 days
1034.2
TCGA-CC-A7IF-01A
59 years, male, asian, stage:iiia, dead, 649 days
1034.1
TCGA-UB-AA0V-01A
69 years, female, white, stage:i, alive, 314 days
1027.0
TCGA-BC-A10X-01A
52 years, female, white, stage:iiia, dead, 770 days
1019.5
TCGA-DD-A11C-01A
69 years, male, white, stage:i, alive, 662 days
1014.5
TCGA-DD-AADR-01A
58 years, male, asian, stage:i, alive, 2028 days
1012.2
TCGA-EP-A26S-01A
70 years, male, white, stage:i, alive, 608 days
1007.0
TCGA-BC-A217-01A
75 years, female, white, stage:ii, dead, 1397 days
1001.3
TCGA-NI-A8LF-01A
74 years, male, white, stage:i, alive, 799 days
998.9
TCGA-CC-A8HT-01A
74 years, male, asian, stage:iiia, dead, 140 days
997.2
TCGA-DD-A4ND-01A
56 years, female, white, stage:i, alive, 2746 days
996.4
TCGA-G3-AAV3-01A
58 years, female, white, stage:ii, alive, 412 days
986.8
TCGA-DD-AAE7-01A
72 years, male, asian, stage:i, alive, 644 days
974.5
TCGA-DD-AAW0-01A
54 years, male, asian, stage:i, alive, 2015 days
967.5
TCGA-2Y-A9H3-01A
45 years, male, white, stage:ii, alive, 1516 days
963.4
TCGA-2Y-A9H0-01A
49 years, male, white, stage:iiia, alive, 3675 days
962.4
TCGA-G3-AAV6-01A
53 years, female, white, stage:iiia, dead, 65 days
956.1
TCGA-CC-A5UE-01A
48 years, male, asian, stage:iiib, dead, 272 days
949.7
TCGA-DD-AADC-01A
53 years, male, asian, stage:i, dead, 425 days
942.8
TCGA-CC-A9FS-01A
55 years, male, asian, stage:ii, alive, 211 days
928.2
TCGA-DD-AADB-01A
51 years, male, asian, stage:i, alive, 1242 days
924.5
TCGA-UB-A7MD-01A
67 years, male, black or african american, stage:i, dead, 52 days
923.9
TCGA-DD-AAD6-01A
66 years, male, asian, stage:iiia, alive, 672 days
922.4
TCGA-DD-AAE2-01A
51 years, male, asian, stage:i, alive, 638 days
921.7
TCGA-DD-AACL-01A
66 years, female, asian, stage:i, dead, 107 days
920.8
TCGA-DD-AAD2-01A
66 years, male, asian, stage:i, alive, 658 days
911.9
TCGA-BC-A69I-01A
69 years, male, white, stage:i, alive, 387 days
911.6
TCGA-G3-A3CH-01A
53 years, male, asian, stage:iiia, alive, 780 days
910.3
TCGA-DD-AAVS-01A
56 years, male, asian, stage:i, alive, 1823 days
899.3
TCGA-G3-AAV4-01A
83 years, female, white, stage:i, dead, 27 days
894.4
TCGA-XR-A8TC-01A
43 years, female, white, stage:i, alive, 1339 days
884.6
TCGA-DD-A73G-01A
73 years, female, white, stage:i, alive, 3478 days
881.4
TCGA-DD-AAD3-01A
43 years, male, asian, stage:i, alive, 1295 days
875.0
TCGA-2Y-A9GW-01A
64 years, male, white, stage:i, dead, 1271 days
869.6
TCGA-DD-AAEE-01A
55 years, male, asian, stage:i, alive, 810 days
868.0
TCGA-2Y-A9H7-01A
81 years, female, white, stage:i, alive, 1168 days
867.7
TCGA-4R-AA8I-01A
66 years, male, white, stage:ii, dead, 262 days
865.1
TCGA-DD-A4NE-01A
75 years, female, white, stage:iiia, dead, 660 days
859.0
TCGA-LG-A6GG-01A
79 years, female, white, stage:ii, alive, 387 days
858.0
TCGA-EP-A2KB-01A
46 years, female, white, stage:i, dead, 596 days
849.3
TCGA-CC-A3MB-01A
36 years, male, asian, stage:iiia, dead, 315 days
846.4
TCGA-WX-AA46-01A
62 years, male, white, stage:ii, alive, 756 days
839.1
TCGA-DD-A4NF-01A
72 years, male, white, stage:i, alive, 942 days
837.3
TCGA-DD-AAEB-01A
60 years, male, asian, stage:i, alive, 478 days
836.4
TCGA-LG-A9QD-01A
68 years, male, white, stage:iiia, alive, 366 days
824.8
TCGA-2Y-A9HA-01A
70 years, male, white, stage:ii, dead, 36 days
823.0
TCGA-DD-AAVQ-01A
38 years, male, asian, stage:i, alive, 2728 days
820.2
TCGA-DD-AACK-01A
70 years, male, asian, stage:i, alive, 9 days
803.1
TCGA-MI-A75I-01A
61 years, male, black or african american, alive, 630 days
802.4
TCGA-BC-A10T-01A
76 years, male, white, dead, 837 days
797.0
TCGA-ED-A8O5-01A
59 years, female, asian, stage:iiia, alive, 406 days
794.3
TCGA-DD-A115-01A
53 years, male, white, stage:iiia, dead, 2542 days
785.9
TCGA-DD-A4NV-01A
61 years, male, white, stage:iiia, alive, 2398 days
782.6
TCGA-XR-A8TE-01A
16 years, male, white, stage:iiia, alive, 925 days
779.4
TCGA-RG-A7D4-01A
69 years, male, black or african american, stage:ii, alive, 1098 days
777.7
TCGA-CC-5258-01A
48 years, male, asian, stage:ii, dead, 129 days
757.4
TCGA-2Y-A9H4-01A
68 years, male, black or african american, stage:i, alive, 1452 days
756.6
TCGA-RC-A7S9-01A
47 years, female, asian, stage:i, alive, 640 days
755.7
TCGA-2Y-A9H6-01A
68 years, female, white, stage:i, alive, 357 days
752.2
TCGA-DD-AACU-01A
59 years, male, asian, stage:i, alive, 1567 days
752.0
TCGA-CC-A5UC-01A
63 years, male, asian, stage:iiia, dead, 347 days
740.7
TCGA-3K-AAZ8-01A
65 years, male, black or african american, stage:iiib, alive, 396 days
734.6
TCGA-G3-AAV2-01A
50 years, male, white, stage:i, alive, 372 days
732.1
TCGA-2Y-A9H9-01A
70 years, male, white, stage:i, alive, 697 days
730.4
TCGA-DD-AADP-01A
45 years, male, asian, stage:i, alive, 458 days
727.1
TCGA-ED-A459-01A
47 years, male, asian, stage:ii, alive, 910 days
724.7
TCGA-EP-A3RK-01A
73 years, male, white, stage:iiia, alive, 363 days
721.1
TCGA-G3-A25Z-01A
58 years, male, asian, stage:i, alive, 655 days
719.0
TCGA-CC-A5UD-01A
45 years, male, asian, stage:iiia, dead, 304 days
718.3
TCGA-ED-A7PY-01A
20 years, female, asian, stage:ii, alive, 390 days
715.2
TCGA-ED-A7XP-01A
53 years, female, asian, stage:ii, alive, 400 days
714.7
TCGA-K7-A6G5-01A
66 years, male, white, stage:i, alive, 512 days
714.4
TCGA-DD-AAEK-01A
51 years, male, asian, stage:ii, alive, 1067 days
709.5
TCGA-ED-A66X-01A
35 years, male, asian, stage:iiia, alive, 406 days
707.0
TCGA-CC-5263-01A
35 years, male, asian, stage:iiia, dead, 129 days
703.7
TCGA-DD-A1EH-01A
23 years, male, white, stage:iii, alive, 1495 days
702.9
TCGA-DD-AACN-01A
32 years, male, asian, stage:i, alive, 1302 days
702.1
TCGA-DD-A4NL-01A
46 years, male, white, stage:i, alive, 1711 days
696.0
TCGA-G3-A7M9-01A
70 years, male, white, stage:iiib, dead, 56 days
690.9
TCGA-DD-AAED-01A
51 years, male, asian, stage:i, alive, 763 days
688.5
TCGA-DD-A3A8-01A
75 years, male, white, stage:ii, dead, 11 days
684.1
TCGA-DD-AADF-01A
64 years, female, asian, stage:i, dead, 115 days
680.4
TCGA-G3-A3CI-01A
71 years, male, white, stage:i, alive, 180 days
677.5
TCGA-DD-A39Z-01A
43 years, female, stage:ii, dead, 601 days
674.7
TCGA-DD-A4NQ-01A
60 years, male, white, stage:ii, dead, 373 days
665.1
TCGA-CC-A3MC-01A
54 years, male, asian, stage:iiia, alive, 363 days
659.9
TCGA-DD-A39V-01A
77 years, male, white, stage:ii, dead, 643 days
659.5
TCGA-2Y-A9GS-01A
58 years, male, white, dead, 724 days
647.0
TCGA-EP-A2KC-01A
62 years, male, black or african american, stage:i, dead, 19 days
641.8
TCGA-DD-AADU-01A
60 years, male, asian, stage:ii, alive, 554 days
641.7
TCGA-2Y-A9H5-01A
59 years, female, white, stage:i, dead, 555 days
640.7
TCGA-G3-AAUZ-01A
48 years, male, stage:i, alive, 480 days
638.0
TCGA-5C-A9VH-01A
70 years, male, white, stage:i, alive, 322 days
638.0
TCGA-MI-A75C-01A
64 years, male, white, stage:i, alive, 291 days
628.8
TCGA-CC-5264-01A
71 years, male, asian, stage:iiia, dead, 102 days
624.0
TCGA-DD-AAEA-01A
65 years, male, asian, stage:i, alive, 575 days
621.5
TCGA-T1-A6J8-01A
68 years, male, white, alive, 23 days
616.5
TCGA-RC-A7SH-01A
42 years, male, asian, stage:ii, alive, 468 days
613.0
TCGA-DD-AACQ-01A
50 years, male, asian, stage:ii, dead, 432 days
612.8
TCGA-DD-AADW-01A
48 years, male, asian, stage:i, alive, 587 days
604.2
TCGA-HP-A5MZ-01A
62 years, male, stage:i, dead, 91 days
604.0
TCGA-DD-AAEH-01A
73 years, male, asian, stage:i, alive, 784 days
600.7
TCGA-DD-A1EI-01A
46 years, male, asian, stage:i, alive, 183 days
599.9
TCGA-DD-AAVW-01A
35 years, male, asian, stage:i, alive, 2317 days
597.5
TCGA-DD-A113-01A
55 years, female, white, stage:ii, alive, 2425 days
594.9
TCGA-2Y-A9GY-01A
64 years, female, white, stage:ii, dead, 757 days
594.7
TCGA-FV-A3I1-01A
female, white, stage:ii, dead, 247 days
587.3
TCGA-FV-A23B-01A
70 years, female, white, stage:ii, dead, 1852 days
582.0
TCGA-ZS-A9CF-01A
64 years, male, white, stage:ii, alive, 2412 days
581.0
TCGA-DD-AAW2-01A
69 years, male, asian, stage:i, alive, 1855 days
578.7
TCGA-ED-A66Y-01A
51 years, female, asian, stage:iiia, dead, 296 days
575.4
TCGA-CC-A8HS-01A
18 years, male, asian, stage:iiic, dead, 300 days
567.8
TCGA-DD-A4NO-01A
66 years, male, white, stage:i, alive, 2245 days
561.0
TCGA-CC-A7IG-01A
47 years, male, asian, stage:ii, dead, 299 days
560.6
TCGA-DD-AACE-01A
62 years, male, asian, stage:i, alive, 2184 days
559.1
TCGA-DD-AADN-01A
59 years, male, asian, stage:i, alive, 898 days
558.8
TCGA-XR-A8TD-01A
49 years, female, white, stage:iiib, alive, 1030 days
556.9
TCGA-G3-A5SM-01A
58 years, male, white, stage:ii, alive, 520 days
550.4
TCGA-BC-A10W-01A
50 years, male, asian, dead, 91 days
546.5
TCGA-DD-A73A-01A
71 years, male, white, stage:i, alive, 728 days
544.7
TCGA-G3-A25V-01A
68 years, male, white, stage:i, alive, 860 days
536.5
TCGA-BC-A110-01A
51 years, female, black or african american, dead, 2116 days
536.0
TCGA-EP-A3JL-01A
76 years, male, white, stage:i, alive, 303 days
534.9
TCGA-WJ-A86L-01A
68 years, female, white, stage:i, alive, 345 days
534.2
TCGA-MI-A75E-01A
61 years, male, white, stage:iiic, alive, 507 days
533.3
TCGA-DD-A1EL-01A
23 years, male, black or african american, stage:ii, dead, 415 days
526.7
TCGA-FV-A2QR-01A
male, white, stage:i, dead, 581 days
526.0
TCGA-GJ-A9DB-01A
68 years, male, white, stage:i, dead, 67 days
523.9
TCGA-DD-A4NP-01A
32 years, male, white, stage:i, alive, 3308 days
523.1
TCGA-BC-A3KG-01A
68 years, female, white, stage:ii, alive, 680 days
522.6
TCGA-DD-AACB-01A
74 years, female, asian, stage:i, alive, 2324 days
520.7
TCGA-G3-A3CJ-01A
52 years, male, american indian or alaska native, stage:ii, alive, 594 days
517.3
TCGA-EP-A12J-01A
63 years, male, black or african american, stage:i, alive, 570 days
517.0
TCGA-DD-A1EK-01A
64 years, female, white, stage:ivb, dead, 558 days
515.6
TCGA-CC-A7IH-01A
58 years, male, asian, stage:iiia, alive, 365 days
515.6
TCGA-2Y-A9H1-01A
58 years, male, white, stage:i, dead, 1229 days
511.9
TCGA-CC-5262-01A
67 years, male, asian, stage:iiic, dead, 103 days
510.5
TCGA-BC-A3KF-01A
66 years, female, white, stage:i, alive, 8 days
501.5
TCGA-ED-A627-01A
74 years, male, white, stage:i, alive, 423 days
498.9
TCGA-DD-AADY-01A
55 years, female, asian, stage:i, alive, 555 days
498.7
TCGA-ED-A4XI-01A
58 years, male, asian, stage:ii, alive, 819 days
497.2
TCGA-DD-AAE6-01A
59 years, female, asian, stage:i, alive, 141 days
492.2
TCGA-DD-A1EA-01A
68 years, male, asian, stage:ii, alive, 2415 days
492.0
TCGA-DD-AADM-01A
58 years, male, asian, stage:ii, dead, 12 days
487.2
TCGA-CC-A7IL-01A
61 years, male, asian, stage:iiia, dead, 278 days
484.5
TCGA-BC-A8YO-01A
66 years, female, white, stage:iiic, alive, 562 days
484.4
TCGA-BD-A3ER-01A
62 years, male, white, stage:ii, alive, 1115 days
482.4
TCGA-FV-A2QQ-01A
80 years, male, white, stage:i, alive, 729 days
479.5
TCGA-G3-A3CK-01A
61 years, male, asian, stage:i, alive, 585 days
472.9
TCGA-FV-A495-01A
51 years, female, white, stage:ii, alive, 1 days
472.2
TCGA-XR-A8TF-01A
74 years, male, white, stage:i, dead, 693 days
471.5
TCGA-KR-A7K7-01A
61 years, female, white, stage:ii, alive, 951 days
470.1
TCGA-XR-A8TG-01A
59 years, male, white, stage:i, alive, 898 days
466.9
TCGA-ES-A2HT-01A
54 years, male, black or african american, stage:i, dead, 438 days
462.6
TCGA-RC-A6M4-01A
74 years, female, white, stage:iiia, alive, 22 days
452.2
TCGA-FV-A4ZQ-01A
52 years, male, white, stage:i, alive, 12 days
449.0
TCGA-BC-A10S-01A
81 years, male, white, dead, 1423 days
446.9
TCGA-BC-A10Z-01A
62 years, female, white, stage:i, dead, 34 days
445.3
TCGA-DD-AAW3-01A
69 years, male, asian, stage:i, alive, 1633 days
441.8
TCGA-WX-AA47-01A
33 years, female, white, stage:iiia, dead, 556 days
441.6
TCGA-DD-AAVY-01A
56 years, male, asian, stage:iiia, alive, 1970 days
438.9
TCGA-CC-5259-01A
60 years, female, asian, stage:iiic, alive, 250 days
438.8
TCGA-G3-A25S-01A
64 years, male, white, stage:i, dead, 416 days
436.0
TCGA-DD-AAE4-01A
49 years, female, asian, stage:i, alive, 608 days
434.9
TCGA-DD-AACA-01A
65 years, male, asian, stage:i, alive, 2301 days
433.6
TCGA-UB-AA0U-01A
60 years, male, white, stage:ii, alive, 327 days
431.9
TCGA-2Y-A9GV-01A
54 years, female, white, stage:i, dead, 2532 days
429.0
TCGA-FV-A3R3-01A
38 years, female, white, stage:i, dead, 366 days
421.8
TCGA-DD-A4NJ-01A
54 years, female, white, stage:ii, alive, 928 days
417.3
TCGA-DD-A3A3-01A
45 years, male, asian, stage:i, dead, 535 days
410.3
TCGA-DD-A39W-01A
29 years, female, white, stage:iii, dead, 827 days
407.4
TCGA-5R-AAAM-01A
65 years, female, white, stage:ii, dead, 46 days
407.1
TCGA-EP-A2KA-01A
52 years, female, white, stage:iiia, dead, 627 days
404.9
TCGA-5R-AA1C-01A
57 years, male, white, stage:ii, alive, 520 days
403.5
TCGA-DD-A1ED-01A
68 years, male, white, stage:i, alive, 2301 days
402.8
TCGA-BD-A2L6-01A
69 years, male, white, alive, 1363 days
402.7
TCGA-DD-AACJ-01A
75 years, male, asian, stage:ii, alive, 2102 days
401.1
TCGA-MI-A75H-01A
77 years, male, white, alive, 747 days
400.2
TCGA-WQ-AB4B-01A
62 years, male, white, stage:ii, alive, 395 days
394.1
TCGA-G3-A5SJ-01A
59 years, male, white, stage:i, alive, 698 days
392.9
TCGA-DD-AACD-01A
48 years, male, asian, stage:i, dead, 381 days
391.0
TCGA-ZP-A9D4-01A
64 years, female, white, alive, 395 days
390.4
TCGA-FV-A4ZP-01A
78 years, male, white, stage:iiia, dead, 2486 days
388.7
TCGA-PD-A5DF-01A
58 years, female, white, stage:iiib, dead, 639 days
387.6
TCGA-G3-A3CG-01A
80 years, male, white, stage:i, alive, 673 days
384.9
TCGA-G3-A25Y-01A
52 years, female, asian, stage:i, dead, 452 days
380.6
TCGA-DD-AAVU-01A
46 years, male, asian, stage:ii, alive, 2202 days
377.9
TCGA-WX-AA44-01A
64 years, female, white, stage:i, alive, 615 days
369.7
TCGA-DD-A119-01A
40 years, male, asian, stage:iv, dead, 223 days
366.5
TCGA-DD-AADQ-01A
59 years, male, asian, stage:ii, alive, 436 days
365.3
TCGA-DD-A4NR-01A
85 years, female, white, stage:i, dead, 9 days
365.1
TCGA-CC-A8HV-01A
51 years, female, asian, stage:ii, dead, 279 days
362.5
TCGA-DD-A1EC-01A
20 years, female, white, stage:i, alive, 602 days
362.4
TCGA-DD-AACH-01A
69 years, male, asian, stage:ii, dead, 195 days
359.6
TCGA-G3-A5SL-01A
70 years, male, white, stage:ii, alive, 621 days
359.3
TCGA-ZP-A9CV-01A
59 years, male, white, dead, 1088 days
353.8
TCGA-KR-A7K2-01A
64 years, male, white, stage:i, alive, 829 days
351.9
TCGA-DD-A3A4-01A
37 years, male, white, stage:iiia, dead, 612 days
339.3
TCGA-DD-AADI-01A
43 years, female, asian, stage:i, alive, 1085 days
329.7
TCGA-BD-A3EP-01A
76 years, female, black or african american, stage:i, alive, 409 days
328.1
TCGA-KR-A7K8-01A
57 years, male, stage:i, alive, 906 days
328.0
TCGA-DD-AAD8-01A
73 years, female, asian, stage:i, alive, 1219 days
327.8
TCGA-DD-AADA-01A
66 years, female, asian, stage:i, alive, 1233 days
327.7
TCGA-ZS-A9CD-01A
73 years, male, white, stage:ii, dead, 1386 days
323.6
TCGA-2Y-A9GX-01A
68 years, male, white, stage:i, alive, 2442 days
321.9
TCGA-DD-A4NS-01A
62 years, female, white, stage:i, dead, 2456 days
321.8
TCGA-CC-A8HU-01A
39 years, female, asian, stage:iiia, dead, 344 days
320.3
TCGA-DD-AAE0-01A
45 years, female, asian, stage:iiia, alive, 555 days
316.6
TCGA-DD-A39X-01A
78 years, female, white, stage:i, dead, 1694 days
316.2
TCGA-DD-AAEG-01A
59 years, female, asian, stage:i, alive, 719 days
310.1
TCGA-DD-A4NH-01A
65 years, female, white, stage:iiib, alive, 917 days
307.2
TCGA-DD-AAD1-01A
51 years, female, asian, stage:i, alive, 564 days
300.6
TCGA-DD-AAVX-01A
38 years, male, asian, stage:ii, alive, 1570 days
296.5
TCGA-ZP-A9D1-01A
56 years, female, white, alive, 21 days
289.3
TCGA-KR-A7K0-01A
65 years, male, white, stage:i, dead, 65 days
278.1
TCGA-G3-AAV1-01A
51 years, male, asian, stage:iiic, dead, 359 days
267.4
TCGA-DD-A114-01A
42 years, male, black or african american, stage:ii, dead, 1149 days
260.3
TCGA-DD-AACX-01A
66 years, male, asian, stage:ii, alive, 170 days
255.0
TCGA-GJ-A3OU-01A
59 years, male, white, stage:i, alive, 879 days
254.1
TCGA-DD-AAC8-01A
72 years, male, asian, stage:i, dead, 16 days
251.2
TCGA-BC-4072-01B
74 years, female, white, stage:iiia, dead, 1490 days
248.3
TCGA-DD-A1EG-01A
77 years, male, white, stage:i, dead, 1372 days
242.2
TCGA-DD-AACY-01A
61 years, male, asian, stage:i, alive, 1450 days
237.7
TCGA-CC-5261-01A
44 years, male, asian, stage:ii, dead, 97 days
233.9
TCGA-G3-AAV7-01A
38 years, male, asian, stage:ii, alive, 361 days
224.2
TCGA-5C-A9VG-01A
58 years, male, white, stage:ii, alive, 328 days
220.5
TCGA-DD-AACT-01A
69 years, female, asian, stage:i, alive, 1562 days
216.8
TCGA-DD-A4NG-01A
77 years, male, white, stage:iiia, dead, 802 days
215.8
TCGA-DD-AAVV-01A
56 years, male, asian, stage:ii, alive, 2455 days
214.6
TCGA-ED-A5KG-01A
60 years, female, asian, stage:ii, alive, 854 days
211.5
TCGA-G3-A7M7-01A
65 years, male, white, stage:i, alive, 361 days
210.8
TCGA-K7-AAU7-01A
61 years, male, white, stage:ii, alive, 359 days
192.1
TCGA-DD-A73D-01A
68 years, female, white, stage:ii, alive, 693 days
192.1
TCGA-DD-A3A7-01A
67 years, male, stage:iiib, dead, 419 days
172.9
TCGA-RC-A6M5-01A
20 years, female, white, stage:iva, alive, 15 days
169.1
TCGA-UB-A7MA-01A
62 years, female, white, stage:ii, alive, 848 days
163.3
TCGA-5R-AA1D-01A
17 years, female, white, stage:iiia, alive, 449 days
160.1
TCGA-2Y-A9H2-01A
64 years, female, white, stage:i, alive, 1731 days
155.7
TCGA-DD-AAVR-01A
44 years, male, asian, stage:i, alive, 2513 days
154.1
TCGA-LG-A9QC-01A
48 years, male, white, stage:i, alive, 425 days
149.7
TCGA-O8-A75V-01A
54 years, male, stage:i, alive, 538 days
145.8
TCGA-CC-A7II-01A
55 years, male, asian, stage:iiia, alive, 399 days
142.8
TCGA-G3-AAV5-01A
67 years, male, white, stage:ii, alive, 354 days
137.1
TCGA-DD-A4NB-01A
25 years, male, white, stage:i, alive, 989 days
135.1
TCGA-YA-A8S7-01A
69 years, male, white, stage:iiia, dead, 412 days
128.0
TCGA-ZP-A9D2-01A
51 years, male, white, dead, 765 days
124.2
TCGA-G3-A7M6-01A
60 years, female, white, stage:i, alive, 632 days
122.9
TCGA-DD-A1EE-01A
73 years, male, white, stage:iiia, dead, 349 days
117.7
TCGA-DD-AACI-01A
69 years, male, asian, stage:ii, alive, 1618 days
110.9
TCGA-DD-A3A9-01A
64 years, female, white, stage:ivb, dead, 931 days
106.7
TCGA-WQ-A9G7-01A
female, white, alive, 30 days
105.2
TCGA-BC-A10R-01A
66 years, female, white, dead, 308 days
102.6
TCGA-ED-A97K-01A
54 years, male, asian, stage:iiia, alive, 6 days
91.7
TCGA-CC-A1HT-01A
50 years, male, asian, stage:iiia, dead, 101 days
88.3
TCGA-G3-A25X-01A
73 years, male, asian, stage:ii, alive, 1779 days
77.5
TCGA-CC-A3MA-01A
61 years, male, asian, stage:iiia, dead, 303 days
52.3
TCGA-G3-A25T-01A
45 years, female, white, stage:iiia, alive, 1553 days
41.7
TCGA-DD-AAD5-01A
54 years, male, asian, stage:i, alive, 1345 days
36.0
TCGA-MR-A8JO-01A
34 years, male, white, stage:i, alive, 330 days
26.6
TCGA-ED-A7PX-01A
48 years, female, asian, stage:ii, alive, 6 days
9.1
TCGA-DD-AA3A-01A
81 years, female, white, stage:i, dead, 410 days
6.6
TCGA-BC-A10Q-01A
72 years, female, white, dead, 1135 days
5.6
TCGA-CC-A7IJ-01A
56 years, male, asian, stage:ii, alive, 382 days
3.5
TCGA-BC-A112-01A
80 years, male, white, dead, 153 days
1.4
TCGA-DD-A3A6-01A
72 years, female, white, stage:ii, dead, 3258 days
1.4
TCGA-CC-5260-01A
61 years, female, asian, stage:iiic, dead, 87 days
1.3
TCGA-FV-A3I0-01A
76 years, female, white, stage:ii, alive, 848 days
1.2
TCGA-DD-A4NA-01A
67 years, female, white, stage:iiic, alive, 1008 days
0.5
TCGA-ED-A82E-01A
60 years, female, asian, stage:iiia, alive, 408 days
0.5
TCGA-CC-A3M9-01A
45 years, male, asian, stage:iiia, dead, 300 days
0.2
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LIVER CANCER - Protein expressioni
A mouse-over function shows sample information and annotation data. Click on an image to view it in a full screen mode. Samples can be filtered based on level of antibody staining by selecting one or several of the following categories: high, medium, low and not detected. The assay and annotation is described here.
Note that samples used for immunohistochemistry by the Human Protein Atlas do not correspond to samples in the TCGA dataset.
Antibody stainingi
Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.
Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.
The Human Protein Atlas project is funded
