BASAL GANGLIA - Expression summary
Protein expression
Caudatei
h
m
l
n
Glial cells: Not detected
Neuronal cells: Not detected
Protein profiling
Multiplex tissuei
RNA expressioni
Consensus:0.2 nTPM
HPA:0.2 nTPM
GTEx:3.8 nTPM
FANTOM5:0.0 Scaled Tags Per Million
Pig:1.0 nTPM
Mouse:0.0 nTPM
Allen mouse:0.1 Expression energy

CAUDATE - Antibody stainingi
Antibody HPA021836Antibody HPA052215Antibody CAB025197
Glial cells Not detectedNot detectedNot detected
Neuronal cells Not detectedNot detectedLow





BASAL GANGLIA - HPA Brain RNA-seq
Max nTPM 0.2
Sample id Sample description nTPM
Caudate nucleus
nTPM: 0.2
2290 Female, age 72, unknown 0.3
1781 Male, age 74, unknown 0.2
1854 Male, age 80, left hemisphere 0.2
1857 Female, age 85, left hemisphere 0.2
2481 Female, age 94, left hemisphere 0.2
2846 Female, age 79, unknown 0.2
2288 Male, age 75, left hemisphere 0.1
2289 Male, age 61, right hemisphere 0.1
Claustrum
nTPM: 0.1
2198 Male, age 80, both hemispheres 0.2
1956 Male, age 74, unknown 0.1
2196 Female, age 79, unknown 0.1
2284 Female, age 91, both hemispheres 0.1
2392 Female, age 94, both hemispheres 0.1
2491 Male, age 75, both hemispheres 0.1
2568 Male, age 61, both hemispheres 0.1
2645 Female, age 72, unknown 0.1
2292 Female, age 85, both hemispheres 0.0
Globus pallidus, externus
nTPM: 0.2
1996 Male, age 80, right hemisphere 0.3
2567 Female, age 72, unknown 0.2
2772 Female, age 79, unknown 0.2
2646 Male, age 61, right hemisphere 0.1
2395 Male, age 75, both hemispheres 0.0
Globus pallidus, internus
nTPM: 0.2
2287 Male, age 75, right hemisphere 0.4
2483 Female, age 94, right hemisphere 0.2
2566 Female, age 72, unknown 0.2
2778 Female, age 91, both hemispheres 0.2
1818 Male, age 74, unknown 0.1
2037 Male, age 80, right hemisphere 0.1
2111 Female, age 85, right hemisphere 0.1
Nucleus accumbens
nTPM: 0.2
1783 Male, age 74, unknown 0.3
2286 Male, age 75, left hemisphere 0.3
2732 Male, age 80, right hemisphere 0.3
1806 Female, age 85, left hemisphere 0.2
1856 Female, age 91, right hemisphere 0.2
2698 Female, age 72, unknown 0.1
2824 Male, age 61, right hemisphere 0.1
2391 Female, age 94, left hemisphere 0.0
Nucleus basalis of Meynert
nTPM: 0.1
2393 Male, age 80, right hemisphere 0.2
2569 Male, age 61, both hemispheres 0.2
2484 Female, age 94, left hemisphere 0.1
2821 Male, age 75, both hemispheres 0.0
Nucleus of the diagonal band
nTPM: 0.1
1979 Male, age 74, unknown 0.2
2775 Male, age 80, right hemisphere 0.2
1812 Female, age 91, both hemispheres 0.1
2029 Male, age 61, right hemisphere 0.1
2195 Female, age 85, both hemispheres 0.1
Olfactory tubercle
nTPM: 0.2
2856 Male, age 75, right hemisphere 0.3
1846 Male, age 80, right hemisphere 0.2
2487 Female, age 94, left hemisphere 0.2
1998 Female, age 91, both hemispheres 0.1
Putamen
nTPM: 0.2
2489 Female, age 72, unknown 0.3
1829 Male, age 74, unknown 0.2
1838 Male, age 80, right hemisphere 0.2
2466 Female, age 79, unknown 0.2
2647 Male, age 75, left hemisphere 0.2
1937 Female, age 91, right hemisphere 0.1
2482 Female, age 94, left hemisphere 0.1
Septal nuclei
nTPM: 0.1
2059 Female, age 85, both hemispheres 0.3
1960 Male, age 74, unknown 0.2
2009 Female, age 91, both hemispheres 0.1
2031 Female, age 72, unknown 0.1
2199 Male, age 80, right hemisphere 0.1
2394 Male, age 61, left hemisphere 0.1
2629 Female, age 94, right hemisphere 0.1

BASAL GANGLIA - GTEx RNA-seqi
Max average nTPM 3.8
GTEx sample id Sample description nTPM
Brain - Caudate (basal ganglia)
Average nTPM: 1.9
Samples: 246

Max nTPM: 36.4
Min nTPM: 0.0
Std nTPM: 3.5
Median nTPM: 0.8
GTEX-11WQC-0011-R5a-SM-5BC74 60-69 years, male 36.4
GTEX-ZDXO-0011-R5a-SM-4WKG5 60-69 years, male 18.8
GTEX-YFC4-0011-R5a-SM-4RGLR 40-49 years, female 18.0
GTEX-ZV68-0011-R5a-SM-4YCDW 50-59 years, female 15.4
GTEX-UTHO-0011-R5A-SM-3GIJD 60-69 years, male 14.7
GTEX-Z93S-0011-R5b-SM-4RGNI 50-59 years, male 13.5
GTEX-YJ89-0011-R5a-SM-4V6GM 60-69 years, male 10.6
GTEX-14PQA-0011-R5b-SM-6AJC2 50-59 years, female 9.2
GTEX-1F48J-0011-R5b-SM-9OSVZ 50-59 years, female 8.9
GTEX-13NZA-0011-R5b-SM-5KM4K 60-69 years, male 7.6
GTEX-ZAB4-0011-R5a-SM-4SOKC 40-49 years, male 7.1
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Brain - Nucleus accumbens (basal ganglia)
Average nTPM: 3.8
Samples: 246

Max nTPM: 488.5
Min nTPM: 0.0
Std nTPM: 31.2
Median nTPM: 0.6
GTEX-16Z82-0011-R6a-SM-7IGLV 60-69 years, male 488.5
GTEX-QVUS-0011-R6A-SM-3GACX 60-69 years, female 40.5
GTEX-ZAB4-0011-R6a-SM-4SOKD 40-49 years, male 27.2
GTEX-11WQC-0011-R6a-SM-5BC77 60-69 years, male 17.4
GTEX-ZF28-0011-R6a-SM-4WKHI 60-69 years, male 16.4
GTEX-1GZHY-0011-R6a-SM-9OSWL 50-59 years, female 13.6
GTEX-YJ89-0011-R6a-SM-4V6GN 60-69 years, male 13.1
GTEX-1H1ZS-0011-R6b-SM-A9G1F 70-79 years, male 12.7
GTEX-Z93S-0011-R6b-SM-4RGNJ 50-59 years, male 12.3
GTEX-1E1VI-0011-R6a-SM-9OSVJ 50-59 years, male 10.0
GTEX-1EX96-0011-R6a-SM-9OSVV 50-59 years, male 7.9
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Brain - Putamen (basal ganglia)
Average nTPM: 1.9
Samples: 205

Max nTPM: 25.2
Min nTPM: 0.0
Std nTPM: 3.5
Median nTPM: 0.6
GTEX-ZF28-0011-R7a-SM-4WKF5 60-69 years, male 25.2
GTEX-11WQC-0011-R7b-SM-5BC7A 60-69 years, male 24.1
GTEX-Z93S-0011-R7b-SM-4RGNK 50-59 years, male 18.1
GTEX-NL3H-0011-R7a-SM-2I3G5 60-69 years, male 17.3
GTEX-Y8DK-0011-R7A-SM-4SOJZ 60-69 years, male 12.9
GTEX-1HCU6-0011-R7b-SM-ARL77 60-69 years, female 12.0
GTEX-YFC4-0011-R7b-SM-4V6E2 40-49 years, female 10.8
GTEX-YJ89-0011-R7a-SM-4V6GO 60-69 years, male 10.3
GTEX-1EU9M-0011-R7b-SM-9OSVU 60-69 years, male 10.1
GTEX-ZE9C-0011-R7a-SM-4WWCX 60-69 years, male 7.3
GTEX-ZDXO-0011-R7a-SM-4WWCU 60-69 years, male 7.2
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BASAL GANGLIA - FANTOM5 CAGEi
Max Scaled Tags Per Million 0
FANTOM5 sample id Sample description Scaled Tags Per Million
Caudate nucleus
Scaled Tags Per Million: 0.0
FF:10164-103B2 76 years, female 0.0
Globus pallidus
Scaled Tags Per Million: 0.0
FF:10175-103C4 60 years, female 0.0
FF:10161-103A8 76 years, female 0.0
Nucleus accumbens
Scaled Tags Per Million: 0.0
FF:10037-101F1 23-56 years, mixed 0.0
Putamen
Scaled Tags Per Million: 0.0
FF:10176-103C5 60 years, female 0.0

BASAL GANGLIA - Pig RNA-seqi
Average nTPM 1.0
Pig sample Sample description nTPM
Caudate
nTPM: 0.9
Samples: 4

Max nTPM: 1.4
Min nTPM: 0.5
Sample A Female 1.0
Sample B Female 1.4
Sample C Male 0.5
Sample D Male 0.8
Putamen
nTPM: 0.5
Samples: 4

Max nTPM: 0.7
Min nTPM: 0.4
Sample A Female 0.4
Sample B Female 0.7
Sample C Male 0.4
Sample D Male 0.5
Septum
nTPM: 1.0
Samples: 4

Max nTPM: 1.5
Min nTPM: 0.8
Sample A Female 0.8
Sample B Female 0.8
Sample C Male 1.5
Sample D Male 1.0
Ventral pallidum
nTPM: 0.6
Samples: 4

Max nTPM: 0.8
Min nTPM: 0.5
Sample A Female 0.5
Sample B Female 0.5
Sample C Male 0.8
Sample D Male 0.7

BASAL GANGLIA - Mouse RNA-seqi
Average nTPM 0.0
Mouse sample Sample description nTPM
Caudate putamen
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0
Septum
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0
Ventral forebrain
nTPM: 0.0
Samples: 4

Max nTPM: 0.0
Min nTPM: 0.0
Sample A Male 0.0
Sample B Male 0.0
Sample C Female 0.0
Sample D Female 0.0

BASAL GANGLIA - Allen Mouse ISHi
Max Expression energy 0.1
Allen experiment id Experiment description Expression energy
Striatum
Expression energy: 0.0
68667497 Antisense, RP_050201_02_D07, Mouse strain C57BL/6J (56 days, male) 0.0
Pallidum
Expression energy: 0.1
68667497 Antisense, RP_050201_02_D07, Mouse strain C57BL/6J (56 days, male) 0.1

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The Human Protein Atlas

The Human Protein Atlas project is funded
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