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PSME1
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: High
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:211.6 nTPM
HPA:133.0 nTPM
GTEx:211.6 nTPM
FANTOM5:529.9 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA006632
Glandular cells High


SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 133.0
overview
Male, age 65
Small intestine sample 232
nTPM: 141
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 128.8
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 128.3
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 134

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 211.6
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 211.6
Samples: 187

Max nTPM: 393.2
Min nTPM: 100.1
Std nTPM: 57.7
Median nTPM: 205.0
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 393.2
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 392.9
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 373.1
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 364.3
GTEX-111YS-1426-SM-5GID8 60-69 years, male 360.7
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 354.7
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 345.4
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 332.4
GTEX-14PK6-1626-SM-6871I 70-79 years, female 330.8
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 315.9
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 302.2
GTEX-YFCO-1326-SM-664NV 40-49 years, male 297.4
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 295.5
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 294.2
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 294.0
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 291.5
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 287.5
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 287.4
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 284.4
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 282.1
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 280.9
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 279.9
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 279.8
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 274.4
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 273.7
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 271.7
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 270.5
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 269.8
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 269.8
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 269.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 268.3
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 266.3
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 264.4
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 262.4
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 257.9
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 257.0
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 254.9
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 254.9
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 254.8
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 253.1
GTEX-1122O-1326-SM-5H11F 60-69 years, female 252.0
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 251.1
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 250.9
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 249.5
GTEX-14PN3-2026-SM-68729 60-69 years, female 248.9
GTEX-144GM-1026-SM-79OKU 20-29 years, male 245.6
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 245.2
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 244.5
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 243.8
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 243.2
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 238.3
GTEX-183FY-1626-SM-793D8 20-29 years, male 237.7
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 237.7
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 237.5
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 236.9
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 233.0
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 232.9
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 231.2
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 230.4
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 230.4
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 230.3
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 230.2
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 230.0
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 229.4
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 228.4
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 228.3
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 227.9
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 227.6
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 227.5
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 227.0
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 226.4
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 222.4
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 222.2
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 222.0
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 221.1
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 221.0
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 218.9
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 218.7
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 216.7
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 216.6
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 214.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 213.6
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 213.4
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 212.8
GTEX-13113-1226-SM-5EGHT 60-69 years, female 212.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 211.5
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 211.1
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 210.3
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 209.2
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 209.0
GTEX-1C475-1426-SM-793CH 40-49 years, female 206.4
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 206.0
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 205.7
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 205.0
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 203.9
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 203.4
GTEX-13111-1426-SM-5DUW3 50-59 years, male 202.4
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 202.4
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 202.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 202.2
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 202.2
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 200.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 200.1
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 200.1
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 199.2
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 198.0
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 197.9
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 196.9
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 196.4
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 195.5
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 195.3
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 194.2
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 194.1
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 194.0
GTEX-ZTSS-0926-SM-59865 40-49 years, male 193.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 191.9
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 191.0
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 190.6
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 190.5
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 189.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 188.9
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 187.8
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 187.3
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 187.0
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 186.2
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 185.8
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 185.1
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 182.6
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 182.1
GTEX-1192X-2526-SM-59868 50-59 years, male 180.6
GTEX-14PKU-1626-SM-6871C 40-49 years, female 180.2
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 178.3
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 178.0
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 177.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 175.4
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 174.4
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 173.6
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 171.1
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 170.6
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 170.0
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 169.3
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 168.6
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 168.5
GTEX-13O61-1326-SM-5KM31 60-69 years, male 168.2
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 168.1
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 168.1
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 167.6
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 167.5
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 167.0
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 166.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 162.9
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 161.2
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 160.5
GTEX-117YX-0326-SM-5GICL 50-59 years, male 159.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 158.5
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 155.9
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 153.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 152.2
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 151.8
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 150.6
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 150.5
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 150.1
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 150.1
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 147.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 146.6
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 146.5
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 144.7
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 142.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 140.0
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 139.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 139.0
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 133.5
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 132.0
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 131.1
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 128.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 128.1
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 126.5
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 126.1
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 125.2
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 124.1
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 122.3
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 115.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 114.2
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 109.3
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 107.9
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 101.0
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 100.1
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SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 529.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 529.9
FF:10024-101D6 15,40,85 years, mixed 529.9

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