We use cookies to enhance the usability of our website. If you continue, we'll assume that you are happy to receive all cookies. More information. Don't show this again.
SLC22A17
SECTIONS
  • TISSUE
  • BRAIN
  • SINGLE CELL TYPE
  • TISSUE CELL TYPE
  • PATHOLOGY
  • DISEASE
  • IMMUNE CELL
  • BLOOD PROTEIN
  • SUBCELLULAR
  • CELL LINE
  • STRUCTURE
  • METABOLIC
ABOUT
  • INTRODUCTION
  • HISTORY
  • ORGANIZATION
  • PUBLICATIONS
  • ANTIBODY SUBMISSION
  • ANTIBODY AVAILABILITY
  • ACKNOWLEDGMENTS
  • CONTACT
NEWS
  • NEWS ARTICLES
  • PRESS ROOM
LEARN
  • DICTIONARY
  • PROTEIN CLASSES
  • PROTEIN EVIDENCE
  • METHODS
  • EDUCATIONAL VIDEOS
DATA
  • DOWNLOADABLE DATA
  • PUBLICATION DATA
  • RELEASE HISTORY
  • SARS-COV-2
HELP
  • ANTIBODY VALIDATION
  • ASSAYS & ANNOTATION
  • DISCLAIMER
  • HELP & FAQ
  • PRIVACY STATEMENT
  • LICENCE & CITATION
Fields »
Search result

Field
Term
Gene name
Class
Subclass
Class
Keyword
Chromosome
External id
Tissue
Cell type
Expression
Patient ID
Tissue
Category
Cluster
Reliability
Brain region
Category
Brain region
Category
Brain region
Category
Reliability
Cell type
Category
Cluster
Tissue
Cell type
Enrichment
Cancer
Prognosis
Cancer
Category
Cell type
Category
Cell lineage
Category
Cluster
Annotation
Disease
Location
Searches
Location
Cell line
Type
Phase
Reliability
Cancer type
Category
Cluster
Pathway
Category
Score
Score
Score
Validation
Validation
Validation
Validation
Antibodies
Protein structure
In atlas
Column


  • SUMMARY

  • TISSUE

  • BRAIN

  • SINGLE CELL

  • TISSUE CELL

  • PATHOLOGY

  • DISEASE

  • IMMUNE

  • BLOOD

  • SUBCELL

  • CELL LINE

  • STRUCTURE

  • METABOLIC

  • SLC22A17
BRAIN AMYGDALA Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Amygdala
AMYGDALA - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:159.4 nTPM
HPA:159.4 nTPM
GTEx:131.8 nTPM
FANTOM5:328.9 Scaled Tags Per Million
Pig:324.0 nTPM
Mouse:391.5 nTPM
Allen mouse:23.3 Expression energy

AMYGDALA - HPA Brain RNA-seq
Max nTPM 159.4
Sample id Sample description nTPM
Amygdala
nTPM: 105.8
1987 Female, age 91, left hemisphere 135.8
2517 Female, age 94, left hemisphere 119.1
2814 Male, age 76, right hemisphere 107.0
2514 Male, age 75, right hemisphere 103.4
2695 Female, age 67, right hemisphere 63.9
Basal amygdala
nTPM: 93.8
2685 Female, age 94, left hemisphere 124.9
2110 Male, age 80, left hemisphere 97.7
1955 Male, age 76, both hemispheres 96.8
2243 Female, age 91, right hemisphere 94.1
2609 Male, age 75, right hemisphere 91.7
2827 Female, age 67, right hemisphere 57.8
Central amygdala
nTPM: 114.4
2826 Female, age 94, left hemisphere 148.9
2701 Female, age 91, right hemisphere 119.7
2239 Male, age 80, left hemisphere 106.1
2515 Male, age 75, right hemisphere 98.9
1905 Male, age 76, both hemispheres 98.2
Corticomedial amygdala
nTPM: 88.7
2829 Male, age 80, left hemisphere 124.5
2242 Female, age 91, right hemisphere 107.2
2429 Female, age 94, left hemisphere 101.2
2428 Male, age 75, right hemisphere 82.3
2240 Male, age 76, both hemispheres 76.4
2535 Female, age 67, right hemisphere 40.8
Lateral amygdala
nTPM: 99.2
2534 Female, age 94, left hemisphere 146.5
2255 Female, age 91, right hemisphere 113.0
1883 Male, age 76, both hemispheres 101.0
2516 Male, age 75, right hemisphere 100.7
2256 Male, age 80, left hemisphere 82.4
2830 Female, age 67, right hemisphere 51.6
Stria terminalis, bed nucleus
nTPM: 159.4
1974 Female, age 91, both hemispheres 180.6
2201 Male, age 74, unknown 158.9
2486 Female, age 94, both hemispheres 138.7

AMYGDALA - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 131.8
GTEx sample id Sample description nTPM
Brain - Amygdala
Average nTPM: 131.8
Samples: 152

Max nTPM: 297.5
Min nTPM: 7.0
Std nTPM: 43.3
Median nTPM: 128.6
GTEX-1HCU6-0011-R4b-SM-ARU74 60-69 years, female 297.5
GTEX-14BIM-0011-R4b-SM-5S2RK 60-69 years, female 258.2
GTEX-1E1VI-0011-R4b-SM-9QEHV 50-59 years, male 252.9
GTEX-TSE9-0011-R4A-SM-3DB7H 60-69 years, female 223.9
GTEX-1AX9I-0011-R4b-SM-7EPIB 60-69 years, male 219.2
GTEX-1HFI6-0011-R4b-SM-A96RT 40-49 years, male 217.9
GTEX-WZTO-0011-R4A-SM-3NMC7 40-49 years, male 208.6
GTEX-15SHU-0011-R4b-SM-7IGLC 40-49 years, female 208.4
GTEX-1B8L1-0011-R4a-SM-7EWFJ 60-69 years, male 206.1
GTEX-145LS-0011-R4b-SM-5S2UT 60-69 years, female 202.6
GTEX-1LVAO-0011-R4a-SM-EXURO 60-69 years, male 199.5
GTEX-131XH-0011-R4b-SM-5DUWB 50-59 years, male 194.2
GTEX-14JIY-0011-R4b-SM-5ZZV7 60-69 years, male 192.0
GTEX-17EVP-0011-R4a-SM-79OML 40-49 years, male 190.7
GTEX-ZAB4-0011-R4a-SM-4SOKB 40-49 years, male 188.3
GTEX-13N1W-0011-R4a-SM-5MR52 70-79 years, male 184.7
GTEX-11ONC-0011-R4b-SM-DO93H 60-69 years, male 180.7
GTEX-1IY9M-0011-R4a-SM-C1YQ2 60-69 years, male 180.5
GTEX-XLM4-0011-R4B-SM-4AT5C 60-69 years, male 180.2
GTEX-QVJO-0011-R4A-SM-2S1QL 60-69 years, female 176.8
GTEX-1F48J-0011-R4b-SM-9OSVX 50-59 years, female 175.8
GTEX-1JMQJ-0011-R4b-SM-EXUT8 50-59 years, male 175.5
GTEX-13O3O-0011-R4b-SM-5KM3F 60-69 years, female 174.8
GTEX-14ASI-0011-R4a-SM-69LQ4 60-69 years, male 173.1
GTEX-13X6J-0011-R4b-SM-5P9K4 50-59 years, male 172.5
GTEX-Q2AG-0011-R4A-SM-2HMKA 40-49 years, female 172.2
GTEX-12WSD-0011-R4b-SM-5LZUA 60-69 years, female 170.1
GTEX-17HG3-0011-R4a-SM-7IGLL 30-39 years, female 169.8
GTEX-1313W-0011-R4b-SM-5KLZV 50-59 years, female 169.5
GTEX-131YS-0011-R4a-SM-5DUVL 60-69 years, female 166.3
GTEX-13SLX-0011-R4a-SM-5O9BJ 50-59 years, female 164.7
GTEX-P44G-0011-R4A-SM-2I3FB 30-39 years, male 162.5
GTEX-13112-0011-R4b-SM-5DUXL 50-59 years, male 161.4
GTEX-1HBPH-0011-R4a-SM-A96RX 40-49 years, female 156.7
GTEX-1LSVX-0011-R4b-SM-EXURP 60-69 years, male 156.2
GTEX-S7SE-0011-R4A-SM-2XCDB 50-59 years, male 156.1
GTEX-1H3NZ-0011-R4a-SM-CL54T 60-69 years, male 155.3
GTEX-13O3Q-0011-R4a-SM-5P9H2 50-59 years, male 154.4
GTEX-YFC4-0011-R4a-SM-4RGLQ 40-49 years, female 153.5
GTEX-14E7W-0011-R4b-SM-62LEA 70-79 years, male 153.4
GTEX-14PJM-0011-R4a-SM-5YYAS 50-59 years, female 153.3
GTEX-13VXU-0011-R4b-SM-5O9CI 50-59 years, male 152.3
GTEX-R55E-0011-R4A-SM-2TC5H 20-29 years, male 151.5
GTEX-1ICLZ-0011-R4a-SM-CMKHL 60-69 years, male 149.1
GTEX-1C6WA-0011-R4a-SM-9QEH2 60-69 years, male 148.2
GTEX-14ABY-0011-R4b-SM-5S2VN 50-59 years, male 147.5
GTEX-14JG1-0011-R4b-SM-62LEB 40-49 years, male 147.1
GTEX-13NYB-0011-R4b-SM-9QEGJ 40-49 years, male 146.5
GTEX-13X6K-0011-R4b-SM-5P9HO 60-69 years, female 145.7
GTEX-1F6IF-0011-R4b-SM-CKZNJ 60-69 years, male 145.2
GTEX-13OW7-0011-R4b-SM-5O9CX 50-59 years, male 144.9
GTEX-1F7RK-0011-R4b-SM-9QEI7 20-29 years, female 144.7
GTEX-12WSF-0011-R4b-SM-5HL88 70-79 years, male 143.4
GTEX-N7MS-0011-R4a-SM-2HMKW 60-69 years, male 143.2
GTEX-1A3MX-0011-R4b-SM-7EWFK 60-69 years, male 142.6
GTEX-T5JC-0011-R4A-SM-32PLT 20-29 years, male 141.0
GTEX-1GN73-0011-R4b-SM-9QEIK 60-69 years, male 140.9
GTEX-11PRG-0011-R4a-SM-DNZZR 50-59 years, male 140.8
GTEX-13OW6-0011-R4a-SM-5O9DX 50-59 years, male 139.6
GTEX-13QIC-0011-R4a-SM-5PNX8 60-69 years, female 139.2
GTEX-11NUK-0011-R4a-SM-DO12B 50-59 years, male 138.5
GTEX-1CB4G-0011-R4b-SM-CJI28 60-69 years, male 138.4
GTEX-X4XX-0011-R4B-SM-46MWL 60-69 years, male 137.9
GTEX-1HBPI-0011-R4a-SM-CJI3K 50-59 years, male 137.9
GTEX-1B996-0011-R4b-SM-9OSVO 60-69 years, male 136.5
GTEX-14PQA-0011-R4b-SM-6AJBU 50-59 years, female 136.2
GTEX-1EMGI-0011-R4b-SM-CJI2D 60-69 years, male 135.7
GTEX-NPJ7-0011-R4a-SM-2I3GJ 60-69 years, female 134.8
GTEX-NL3H-0011-R4a-SM-2I3GK 60-69 years, male 133.8
GTEX-13FLV-0011-R4a-SM-5LZYU 50-59 years, male 132.5
GTEX-13OVL-0011-R4b-SM-5L3HV 50-59 years, male 131.8
GTEX-X585-0011-R4B-SM-46MVH 50-59 years, male 130.8
GTEX-15DYW-0011-R4a-SM-6M46V 60-69 years, female 129.6
GTEX-UTHO-0011-R4A-SM-3GIJP 60-69 years, male 129.3
GTEX-Y8DK-0011-R4A-SM-EXUR1 60-69 years, male 129.2
GTEX-12WSH-0011-R4a-SM-5GU6K 50-59 years, male 128.8
GTEX-13OW8-0011-R4a-SM-9WG6V 60-69 years, male 128.4
GTEX-1399T-0011-R4b-SM-5DUVX 60-69 years, male 128.3
GTEX-13X6I-0011-R4b-SM-5PNU9 60-69 years, male 127.8
GTEX-18464-0011-R4a-SM-7LG6T 50-59 years, male 127.5
GTEX-13NYS-0011-R4b-SM-5MR3O 60-69 years, male 127.3
GTEX-15CHQ-0011-R4a-SM-686ZX 60-69 years, male 127.1
GTEX-RNOR-0011-R4A-SM-3GAD3 50-59 years, female 126.6
GTEX-13OVH-0011-R4a-SM-5KM3W 70-79 years, male 126.0
GTEX-WVLH-0011-R4A-SM-3MJFS 50-59 years, male 124.5
GTEX-1GMR8-0011-R4a-SM-9OSX1 50-59 years, female 124.2
GTEX-13RTJ-0011-R4b-SM-5PNX1 60-69 years, male 123.0
GTEX-ZVZQ-0011-R4b-SM-57WCZ 60-69 years, female 123.0
GTEX-14DAQ-0011-R4a-SM-5YYAI 60-69 years, female 122.5
GTEX-1J1OQ-0011-R4a-SM-D4P2A 40-49 years, female 122.5
GTEX-1F75A-0011-R4a-SM-ARL8J 50-59 years, male 121.9
GTEX-N7MT-0011-R4a-SM-2I3G9 60-69 years, female 121.5
GTEX-1EX96-0011-R4a-SM-ARU82 50-59 years, male 120.4
GTEX-14PN4-0011-R4a-SM-686ZT 50-59 years, male 119.5
GTEX-15EO6-0011-R4a-SM-7KUKZ 50-59 years, male 119.5
GTEX-1GTWX-0011-R4a-SM-C1YQI 60-69 years, male 119.0
GTEX-ZAK1-0011-R4a-SM-6AJBK 50-59 years, female 118.9
GTEX-15ER7-0011-R4a-SM-6M46S 20-29 years, female 118.7
GTEX-13OW5-0011-R4b-SM-5L3HS 60-69 years, male 118.0
GTEX-1H3O1-0011-R4b-SM-A9SKE 60-69 years, male 118.0
GTEX-1GZ4I-0011-R4a-SM-9QEI9 50-59 years, male 117.5
GTEX-1I1GR-0011-R4a-SM-CMKHC 60-69 years, male 116.0
GTEX-13JVG-0011-R4a-SM-5MR4C 60-69 years, male 113.9
GTEX-1C6VR-0011-R4b-SM-9QEGZ 60-69 years, male 113.1
GTEX-QVUS-0011-R4A-SM-3GAE7 60-69 years, female 112.9
GTEX-13PVQ-0011-R4a-SM-5O9CT 50-59 years, male 111.9
GTEX-1N2EE-0011-R4a-SM-EXOII 60-69 years, male 111.5
GTEX-WHSE-0011-R4A-SM-3P5ZN 20-29 years, male 110.1
GTEX-147GR-0011-R4a-SM-5S2V2 60-69 years, male 106.4
GTEX-1HB9E-0011-R4b-SM-ARZLS 50-59 years, male 106.2
GTEX-11TTK-0011-R4a-SM-DNZZU 60-69 years, female 104.8
GTEX-16YQH-0011-R4a-SM-7EPGI 30-39 years, male 104.2
GTEX-15DCD-0011-R4a-SM-69LPB 70-79 years, female 103.9
GTEX-1N2DW-0011-R4b-SM-EZ6MD 50-59 years, male 102.6
GTEX-1H1CY-0011-R4b-SM-CJI3G 60-69 years, female 100.6
GTEX-13N2G-0011-R4b-SM-5MR54 60-69 years, male 100.0
GTEX-NL4W-0011-R4a-SM-2I5GZ 50-59 years, male 99.3
GTEX-15DDE-0011-R4b-SM-7KULI 50-59 years, female 98.9
GTEX-12ZZZ-0011-R4b-SM-5DUV7 60-69 years, male 97.1
GTEX-QDT8-0011-R4A-SM-32PKM 30-39 years, female 96.6
GTEX-1J8Q2-0011-R4a-SM-ADEHA 60-69 years, male 96.6
GTEX-1H1DG-0011-R4a-SM-CE6RQ 70-79 years, male 95.4
GTEX-1H1ZS-0011-R4b-SM-CKZO7 70-79 years, male 95.0
GTEX-13CZV-0011-R4b-SM-5J2NY 60-69 years, male 94.0
GTEX-1GF9W-0011-R4a-SM-CE6RH 60-69 years, male 92.1
GTEX-1J8EW-0011-R4b-SM-ARU89 60-69 years, female 92.0
GTEX-14JFF-0011-R4a-SM-5ZZV5 60-69 years, male 91.7
GTEX-144GL-0011-R4a-SM-5PNUI 50-59 years, male 90.9
GTEX-12WSA-0011-R4a-SM-57WB7 60-69 years, male 89.1
GTEX-1JN6P-0011-R4a-SM-EZ6MS 60-69 years, male 88.3
GTEX-12ZZW-0011-R4a-SM-5DUX9 50-59 years, male 86.3
GTEX-17F97-0011-R4b-SM-7KFS2 50-59 years, male 84.9
GTEX-QMR6-0011-R4A-SM-32PKU 50-59 years, male 83.5
GTEX-P44H-0011-R4A-SM-2XCEW 40-49 years, male 81.7
GTEX-11ZVC-0011-R4a-SM-5BC6Z 50-59 years, female 81.6
GTEX-NPJ8-0011-R4a-SM-2HML3 40-49 years, male 80.9
GTEX-145MI-0011-R4b-SM-5PNZH 60-69 years, female 79.3
GTEX-13SLW-0011-R4b-SM-5S2W2 70-79 years, male 78.6
GTEX-1JJEA-0011-R4a-SM-EXUTC 60-69 years, male 78.4
GTEX-13OVJ-0011-R4b-SM-5P9H5 50-59 years, female 78.3
GTEX-1445S-0011-R4a-SM-5PNWN 60-69 years, male 78.2
GTEX-T6MN-0011-R4A-SM-32QPG 50-59 years, male 76.9
GTEX-ZE9C-0011-R4a-SM-4WKH6 60-69 years, male 73.4
GTEX-1H2FU-0011-R4a-SM-CL551 60-69 years, female 72.7
GTEX-139T8-0011-R4a-SM-5HL54 60-69 years, male 70.8
GTEX-1H23P-0011-R4b-SM-CL54R 60-69 years, male 69.5
GTEX-17EVQ-0011-R4b-SM-7LT94 70-79 years, male 67.1
GTEX-183WM-0011-R4a-SM-7LG6S 70-79 years, female 63.4
GTEX-OHPN-0011-R4A-SM-2I5FD 60-69 years, female 54.0
GTEX-11ZU8-0011-R4a-SM-5BC6Y 60-69 years, male 49.3
GTEX-1CB4J-0011-R4b-SM-9WG5P 60-69 years, male 33.5
GTEX-X4EP-0011-R4B-SM-3P627 60-69 years, female 7.0
Show allShow less

AMYGDALA - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 328.9
FANTOM5 sample id Sample description Scaled Tags Per Million
Amygdala
Scaled Tags Per Million: 328.9
FF:10151-102I7 76 years, female 328.9

AMYGDALA - Pig RNA-seqi

RNA-seq data obtained from pig brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 324.0
Pig sample Sample description nTPM
Amygdala
nTPM: 324.0
Samples: 4

Max nTPM: 474.8
Min nTPM: 234.0
Sample A Female 474.8
Sample B Female 234.0
Sample C Male 275.0
Sample D Male 312.2

AMYGDALA - Mouse RNA-seqi

RNA-seq data obtained from mouse brain is reported as nTPM .

Normal distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 391.5
Mouse sample Sample description nTPM
Amygdala
nTPM: 391.5
Samples: 4

Max nTPM: 447.8
Min nTPM: 349.5
Sample A Male 447.8
Sample B Male 349.5
Sample C Female 392.5
Sample D Female 376.2

AMYGDALA - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

Read more
Max Expression energy 23.3
Allen experiment id Experiment description Expression energy
Cortical subplate
Expression energy: 23.3
74635072 Antisense, RP_060215_03_C09, Mouse strain C57BL/6J (56 days, male) 23.3

Contact

  • NEWS ARTICLES
  • PRESS ROOM
  • contact@proteinatlas.org

The Project

  • INTRODUCTION
  • ORGANIZATION
  • PUBLICATIONS

The Human Protein Atlas

  • DOWNLOADABLE DATA
  • LICENCE & CITATION
  • HELP & FAQ
The Human Protein Atlas project is funded
by the Knut & Alice Wallenberg Foundation.