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BRAIN PONS Show tissue menu
AMYGDALA BASAL GANGLIA CEREBELLUM CEREBRAL CORTEX HIPPOCAMPAL FORMATION HYPOTHALAMUS MEDULLA OBLONGATA MIDBRAIN
OLFACTORY BULB PITUITARY GLAND PONS RETINA SPINAL CORD THALAMUS WHITE MATTER
ANTIBODIES
AND
VALIDATION
Brain proteome
Pons
PONS - Expression summary
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

Protein expressioni

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
No data
RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
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Consensus:299.0 nTPM
HPA:299.0 nTPM
FANTOM5:20.1 Scaled Tags Per Million
Allen mouse:3.4 Expression energy

PONS - HPA Brain RNA-seq
Max nTPM 299.0
Sample id Sample description nTPM
Anterior cochlear nucleus, ventral
nTPM: 272.6
2188 Female, age 91, both hemispheres 288.6
2301 Female, age 85, both hemispheres 279.7
2090 Male, age 80, both hemispheres 269.4
1984 Male, age 76, both hemispheres 252.6
Dorsal cochlear nucleus
nTPM: 272.3
2802 Male, age 74, right hemisphere 296.3
2187 Female, age 91, both hemispheres 282.3
2058 Male, age 76, both hemispheres 264.0
2378 Male, age 80, both hemispheres 263.0
2370 Male, age 61, both hemispheres 255.7
Dorsal tegmental nucleus
nTPM: 277.3
2326 Male, age 74, both hemispheres 290.2
2083 Male, age 80, both hemispheres 284.1
2358 Male, age 61, both hemispheres 272.0
1936 Male, age 76, left hemisphere 263.1
Dorsolateral tegmental area
nTPM: 272.6
2337 Male, age 61, both hemispheres 280.4
2751 Female, age 85, both hemispheres 276.5
2654 Male, age 80, both hemispheres 275.2
2360 Male, age 74, both hemispheres 271.1
2141 Male, age 76, both hemispheres 259.6
Kolliker-Fuse nucleus
nTPM: 289.0
2315 Male, age 76, right hemisphere 315.7
2793 Female, age 91, left hemisphere 285.3
2163 Male, age 80, both hemispheres 266.1
Lateral lemniscal nuclei
nTPM: 264.4
2320 Female, age 91, left hemisphere 271.3
2169 Male, age 76, both hemispheres 271.2
2746 Female, age 85, left hemisphere 269.8
2036 Male, age 80, both hemispheres 259.9
2453 Male, age 74, right hemisphere 250.0
Lateral parabrachial nucleus
nTPM: 276.1
2792 Male, age 76, both hemispheres 313.9
2139 Female, age 85, right hemisphere 281.0
2013 Male, age 80, both hemispheres 274.2
2790 Male, age 61, both hemispheres 235.1
Lateral vestibular nucleus
nTPM: 263.3
2311 Male, age 80, both hemispheres 272.0
2184 Male, age 76, both hemispheres 254.6
Locus coeruleus
nTPM: 266.4
2014 Male, age 55, unknown 279.7
2788 Male, age 74, unknown 274.2
2720 Male, age 74, both hemispheres 271.6
2123 Female, age 91, both hemispheres 268.2
2317 Female, age 72, unknown 263.3
2162 Male, age 80, both hemispheres 257.7
1980 Male, age 76, both hemispheres 250.0
Medial olivary nucleus
nTPM: 299.0
1943 Male, age 61, both hemispheres 308.2
1962 Male, age 76, both hemispheres 302.7
2138 Female, age 91, both hemispheres 302.3
2851 Male, age 80, both hemispheres 282.9
Medial parabrachial nucleus
nTPM: 268.3
2170 Female, age 91, both hemispheres 282.1
2854 Male, age 80, both hemispheres 281.2
2463 Female, age 85, right hemisphere 265.1
2786 Male, age 76, both hemispheres 263.4
2156 Male, age 61, both hemispheres 249.9
Medial periolivary nuclei
nTPM: 269.0
2063 Male, age 76, both hemispheres 275.1
2791 Male, age 74, right hemisphere 273.9
2081 Male, age 80, both hemispheres 266.9
2171 Female, age 85, both hemispheres 265.6
2458 Female, age 91, both hemispheres 263.5
Motor facial nucleus
nTPM: 269.1
2697 Female, age 85, both hemispheres 279.7
2062 Male, age 76, both hemispheres 273.7
2365 Male, age 74, right hemisphere 273.3
2126 Male, age 61, both hemispheres 268.4
2795 Female, age 91, both hemispheres 264.2
2327 Male, age 80, both hemispheres 255.2
Motor trigeminal nucleus
nTPM: 262.8
2309 Male, age 76, both hemispheres 265.9
2560 Male, age 74, both hemispheres 265.0
2079 Male, age 80, both hemispheres 263.5
2321 Female, age 91, both hemispheres 261.3
2335 Male, age 61, both hemispheres 258.5
Nuclei of the trapezoid body
nTPM: 265.7
1983 Male, age 76, both hemispheres 273.2
2159 Male, age 61, both hemispheres 273.2
2166 Male, age 80, both hemispheres 266.6
2735 Female, age 85, both hemispheres 262.0
2368 Female, age 91, both hemispheres 253.7
Paramedian reticular nucleus
nTPM: 268.2
2050 Female, age 85, both hemispheres 275.3
2052 Male, age 76, both hemispheres 270.6
2313 Male, age 61, both hemispheres 264.5
2057 Male, age 80, both hemispheres 262.4
Pontine nuclei
nTPM: 274.9
2454 Male, age 74, left hemisphere 292.2
2319 Female, age 91, both hemispheres 283.9
2787 Female, age 85, both hemispheres 281.1
2109 Female, age 72, unknown 274.3
2727 Male, age 61, right hemisphere 271.7
1863 Male, age 55, unknown 271.0
1968 Male, age 76, left hemisphere 262.9
2115 Male, age 80, left hemisphere 262.3
Pontine raphe nucleus
nTPM: 275.6
2122 Female, age 85, midline 286.2
2853 Male, age 76, midline 264.9
Posteroventral cochlear nucleus
nTPM: 277.5
2135 Female, age 91, both hemispheres 296.2
2341 Male, age 80, both hemispheres 287.1
2752 Female, age 85, both hemispheres 274.1
2070 Male, age 76, both hemispheres 268.7
2371 Male, age 61, both hemispheres 261.2
Principal sensory trigeminal nucleus
nTPM: 269.0
2367 Female, age 91, left hemisphere 274.4
2158 Male, age 61, both hemispheres 267.8
2324 Male, age 76, both hemispheres 267.8
2008 Male, age 80, left hemisphere 266.1
Reticular pontine nucleus, caudal
nTPM: 270.3
2092 Male, age 76, both hemispheres 283.6
2559 Male, age 74, both hemispheres 269.7
2457 Female, age 91, both hemispheres 267.1
2332 Male, age 80, right hemisphere 260.8
Reticular pontine nucleus, oral
nTPM: 274.4
2366 Female, age 91, both hemispheres 282.3
1939 Male, age 80, both hemispheres 275.9
2012 Female, age 85, both hemispheres 275.1
2167 Male, age 76, both hemispheres 273.7
2361 Male, age 74, both hemispheres 264.8
Reticulotegmental nucleus
nTPM: 267.0
2322 Female, age 91, both hemispheres 272.7
2452 Male, age 74, both hemispheres 266.4
2325 Male, age 76, both hemispheres 265.4
2333 Male, age 80, both hemispheres 263.6
Spinal trigeminal nucleus, oral
nTPM: 256.6
1978 Male, age 76, both hemispheres 257.1
2164 Male, age 80, both hemispheres 256.8
2737 Female, age 85, both hemispheres 255.9
Subcoeruleus area
nTPM: 267.7
2369 Female, age 85, left hemisphere 280.9
2451 Male, age 74, both hemispheres 270.9
1958 Male, age 80, both hemispheres 269.9
2323 Female, age 91, left hemisphere 264.2
2089 Male, age 76, left hemisphere 252.4
Superior olive
nTPM: 271.8
2020 Male, age 76, both hemispheres 279.9
2364 Male, age 74, right hemisphere 275.0
1875 Female, age 85, both hemispheres 273.2
2329 Male, age 80, right hemisphere 271.5
2561 Female, age 91, both hemispheres 259.2
Superior vestibular nucleus
nTPM: 283.8
2383 Male, age 74, both hemispheres 305.9
2061 Male, age 76, both hemispheres 273.6
2015 Male, age 80, both hemispheres 272.0
Ventral periolivary nuclei
nTPM: 269.8
2023 Male, age 76, both hemispheres 282.3
2130 Female, age 85, both hemispheres 274.2
2165 Male, age 80, both hemispheres 267.1
2794 Female, age 91, left hemisphere 255.8
Ventrolateral tegmental area, A5 NE cell group
nTPM: 267.0
2840 Female, age 85, both hemispheres 275.3
2359 Male, age 61, both hemispheres 274.4
1959 Male, age 76, both hemispheres 267.6
2161 Male, age 80, both hemispheres 264.7
2456 Female, age 91, both hemispheres 260.1
2449 Male, age 74, both hemispheres 259.9

PONS - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

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Max Scaled Tags Per Million 20.1
FANTOM5 sample id Sample description Scaled Tags Per Million
Locus coeruleus
Scaled Tags Per Million: 20.1
FF:10182-103D2 60 years, female 21.5
FF:10165-103B3 76 years, female 18.6
Pons
Scaled Tags Per Million: 16.7
FF:10033-101E6 18-54 years, mixed 16.7

PONS - Allen Mouse ISHi

In situ hybridization (ISH) data generated by the Allen brain atlas from mouse brain is reported as expression energy. For more details about a particular experiment, click on the corresponding Allen experiment ID.

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Max Expression energy 3.4
Allen experiment id Experiment description Expression energy
Pons
Expression energy: 3.4
100143529 Antisense, RP_110407_01_D06, Mouse strain C57BL/6J (56 days, male) 3.4

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