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PHGDH
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TISSUE PRIMARY DATA SMALL INTESTINE Show tissue menu
ADIPOSE TISSUE ADRENAL GLAND AMYGDALA APPENDIX BASAL GANGLIA BONE MARROW BREAST BRONCHUS CEREBELLUM CEREBRAL CORTEX CERVIX CHOROID PLEXUS COLON DUODENUM ENDOMETRIUM
EPIDIDYMIS ESOPHAGUS FALLOPIAN TUBE GALLBLADDER HEART MUSCLE HIPPOCAMPAL FORMATION HYPOTHALAMUS KIDNEY LIVER LUNG LYMPH NODE MEDULLA OBLONGATA MIDBRAIN NASOPHARYNX ORAL MUCOSA
OVARY PANCREAS PARATHYROID GLAND PITUITARY GLAND PLACENTA PONS PROSTATE RECTUM RETINA SALIVARY GLAND SEMINAL VESICLE SKELETAL MUSCLE SKIN SMALL INTESTINE SMOOTH MUSCLE
SOFT TISSUE SPINAL CORD SPLEEN STOMACH TESTIS THALAMUS THYMUS THYROID GLAND TONGUE TONSIL URINARY BLADDER VAGINA WHITE MATTER
ANTIBODIES
AND
VALIDATION
Dictionary
Small intestine
Tissue proteome
Intestine
SMALL INTESTINE - Expression summary
Protein expression
Small intestinei

On the top, protein expression in current human tissue, based on all annotated cell types, is reported with the units not detected (n), low (l), medium (m) and high (h). Underneath, protein expression in each annotated cell type are reported using the same units.

Protein expression data is based on knowledge-based annotation. For genes where more than one antibody has been used, a collective score is set.

If knowledge-based annotation could not be performed for a gene, no data is displayed here. View antibody staining data further down this page.

Read more
h
m
l
n
Glandular cells: Low
Protein profiling
Multiplex tissuei

A summary of the protein localization in the current human tissue based on multiplex immunohistochemistry profiling in selected tissues is shown for genes where this analysis has been performed.

RNA expressioni

A summary of mRNA expression data available for current tissue based on several datasets. The mRNA expression levels in human tissues are based on RNA-seq data generated by the Human Protein Atlas (HPA), Genotype-Tissue Expression (GTEx) portal and CAGE data generated by the FANTOM5 consortium. Consensus normalized expression levels for human tissues was created by combining the data from HPA and GTEx datasets.

The mRNA expression levels in pig are based on RNA-seq data generated by the Human Protein Atlas (HPA), and for mouse, HPA data and in situ hybridization generated by the Allen brain atlas are reported.

Scroll down to view mRNA expression data in more detail.
Read more
Consensus:13.3 nTPM
HPA:5.9 nTPM
GTEx:13.3 nTPM
FANTOM5:8.6 Scaled Tags Per Million

SMALL INTESTINE - Antibody stainingi

Antibody staining in the annotated cell types in the current human tissue is reported as not detected, low, medium, or high, based on conventional immunohistochemistry profiling in selected tissues. This score is based on the combination of the staining intensity and fraction of stained cells.

Each image is clickable and will lead to virtual microscopy that enables deeper exploration of all samples and also displays staining intensity scores, fraction scores and subcellular localization as well as patient and tissue information for each sample.

Read more
Antibody HPA021241Antibody HPA024031Antibody CAB003681Antibody CAB068216
Glandular cells MediumHighNot detectedLow








SMALL INTESTINE - HPA RNA-seqi

The RNA-seq details section shows detailed information about the individual samples used for the transcript profiling and results of the RNA-seq analysis.

Information about each individual sample is listed below, including gender, age, a tissue section image and estimated fractions of cell types. nTPM (normalized transcripts per million) values give a quantification of the gene abundance which is comparable between different genes and samples.
Read more
Average nTPM 5.9
overview
Male, age 65
Small intestine sample 232
nTPM: 4.2
Cell types%
Glandular cells:
55

Smooth muscle cells:
5

Other cell types:
40

overview
Male, age 39
Small intestine sample 233
nTPM: 5.9
Cell types%
Glandular cells:
40

Smooth muscle cells:
5

Other cell types:
55

overview
Male, age 68
Small intestine sample 234
nTPM: 7.2
Cell types%
Glandular cells:
30

Smooth muscle cells:
15

Other cell types:
55

N/A
Male, age 85
Small intestine sample 235
nTPM: 6.2

SMALL INTESTINE - GTEx RNA-seqi

RNA-Seq data generated by the Genotype-Tissue Expression (GTEx) project from human tissues is reported as mean nTPM. More information can be found on the GTEx portal.

Distribution across the dataset is visualized with box plots, shown as median and 25th and 75th percentiles. Points are displayed as outliers if they are above or below 1.5 times the interquartile range. nTPM values of the individual samples are presented next to the box plot.
Read more
Average nTPM 13.3
GTEx sample id Sample description nTPM
Small Intestine - Terminal Ileum
Average nTPM: 13.3
Samples: 187

Max nTPM: 83.3
Min nTPM: 1.5
Std nTPM: 11.8
Median nTPM: 9.6
GTEX-VJYA-0926-SM-4KL1N 60-69 years, male 83.3
GTEX-13NYB-1826-SM-5J1N3 40-49 years, male 65.6
GTEX-XMK1-1826-SM-4B66F 40-49 years, male 64.5
GTEX-Y5V5-1826-SM-4VDS5 60-69 years, female 58.3
GTEX-1I1GT-1826-SM-ARZLW 60-69 years, female 41.6
GTEX-ZF2S-1726-SM-57WFT 50-59 years, female 41.2
GTEX-13W3W-2026-SM-5K7UL 60-69 years, female 38.8
GTEX-1R9JW-1926-SM-EVR4J 30-39 years, female 37.9
GTEX-131XE-0926-SM-5HL7J 50-59 years, male 36.7
GTEX-17KNJ-1626-SM-718AL 50-59 years, male 36.3
GTEX-WFON-1526-SM-4LVMP 40-49 years, male 34.4
GTEX-1OKEX-1126-SM-DTXEB 60-69 years, male 33.3
GTEX-117YX-0326-SM-5GICL 50-59 years, male 32.3
GTEX-1QW4Y-1226-SM-EWRMY 30-39 years, male 31.3
GTEX-Y3I4-1326-SM-4TT8Z 50-59 years, male 30.1
GTEX-1R9PM-1626-SM-DPRY9 20-29 years, male 29.7
GTEX-WEY5-1526-SM-4LMJF 40-49 years, female 28.3
GTEX-1B8KZ-1126-SM-7IGLX 50-59 years, male 28.1
GTEX-13111-1426-SM-5DUW3 50-59 years, male 27.7
GTEX-Y111-2226-SM-4SOJB 50-59 years, male 27.1
GTEX-ZQUD-0926-SM-57WE3 30-39 years, male 27.0
GTEX-1S82Z-1826-SM-E9TIK 30-39 years, female 26.3
GTEX-1BAJH-2526-SM-7IGOT 70-79 years, male 25.4
GTEX-ZAB5-1526-SM-5HL9P 50-59 years, male 24.6
GTEX-17HHE-1726-SM-79OKT 50-59 years, male 24.4
GTEX-Y3IK-1726-SM-4YCCR 50-59 years, female 23.8
GTEX-11LCK-1926-SM-5A5KE 30-39 years, male 23.1
GTEX-1H1DE-1426-SM-9JGHV 20-29 years, male 22.7
GTEX-1QCLZ-2126-SM-EWRNC 60-69 years, female 22.0
GTEX-15EU6-1826-SM-7PC1W 50-59 years, male 21.3
GTEX-X15G-1426-SM-4PQZK 50-59 years, female 21.0
GTEX-Y114-1426-SM-4TT6W 50-59 years, female 19.7
GTEX-13OVI-1926-SM-5IJCG 60-69 years, female 19.4
GTEX-12WSK-1526-SM-5CVNO 40-49 years, female 19.2
GTEX-17MFQ-1026-SM-7KFSZ 20-29 years, male 18.8
GTEX-1CB4F-1826-SM-7MGXI 60-69 years, male 18.7
GTEX-1RAZA-1826-SM-DTXA2 20-29 years, male 18.2
GTEX-1C64O-2526-SM-79ONO 60-69 years, male 18.1
GTEX-1EMGI-2826-SM-7IGMR 60-69 years, male 17.9
GTEX-1S5ZA-1326-SM-EV7BB 20-29 years, male 17.9
GTEX-WFG8-1626-SM-4LVMB 20-29 years, male 17.7
GTEX-13X6H-1826-SM-7EWCZ 50-59 years, female 17.5
GTEX-1192X-2526-SM-59868 50-59 years, male 17.4
GTEX-1CAMS-2426-SM-7DHMV 40-49 years, female 17.1
GTEX-111CU-1326-SM-5NQ8L 50-59 years, male 17.0
GTEX-1RAZR-1826-SM-E6CRE 40-49 years, male 16.5
GTEX-1R9K5-2026-SM-E6CPS 50-59 years, male 16.4
GTEX-14C39-1826-SM-5ZZW4 40-49 years, male 15.7
GTEX-XPVG-1726-SM-4B65W 50-59 years, male 15.5
GTEX-1R9K4-2326-SM-E6CRB 60-69 years, male 15.5
GTEX-VUSG-1726-SM-4KKZL 50-59 years, male 15.0
GTEX-ZP4G-1626-SM-57WGD 20-29 years, female 15.0
GTEX-13CF3-1226-SM-5LZXN 60-69 years, female 14.8
GTEX-1OJC3-1626-SM-E9U65 20-29 years, male 14.8
GTEX-ZQG8-2526-SM-57WEQ 60-69 years, female 14.7
GTEX-14XAO-1926-SM-6ETZO 60-69 years, female 14.1
GTEX-1MUQO-2426-SM-EAZ5A 60-69 years, male 14.1
GTEX-XBED-1426-SM-4AT4G 60-69 years, male 13.9
GTEX-ZPIC-2326-SM-57WDW 40-49 years, female 13.6
GTEX-14PJ3-1326-SM-664O7 50-59 years, male 13.5
GTEX-ZEX8-1826-SM-57WBH 50-59 years, male 13.5
GTEX-Y5LM-1626-SM-4VDTB 40-49 years, female 13.4
GTEX-1NSGN-2126-SM-DPRYN 50-59 years, male 13.4
GTEX-131XG-1726-SM-5LZUR 50-59 years, female 13.3
GTEX-1AX8Z-2526-SM-731E3 60-69 years, male 13.0
GTEX-WYJK-1526-SM-4ONCW 50-59 years, male 13.0
GTEX-145ME-0926-SM-5O9AR 40-49 years, female 12.8
GTEX-18QFQ-1626-SM-72D7H 30-39 years, male 12.8
GTEX-ZC5H-2326-SM-4WAYT 40-49 years, female 12.7
GTEX-1IKOE-1926-SM-ARU7V 30-39 years, female 12.5
GTEX-1KXAM-2026-SM-DHXKI 60-69 years, male 12.3
GTEX-1RAZQ-2226-SM-DPRZR 30-39 years, male 12.2
GTEX-UPK5-2026-SM-4JBIM 40-49 years, male 12.1
GTEX-1K9T9-2726-SM-D4P3E 50-59 years, female 12.1
GTEX-1L5NE-1826-SM-EV79T 50-59 years, male 12.1
GTEX-14PK6-1626-SM-6871I 70-79 years, female 12.0
GTEX-15DZA-0826-SM-6AJBF 30-39 years, female 11.9
GTEX-18A66-2526-SM-7KFTZ 60-69 years, male 11.7
GTEX-1PIEJ-1526-SM-E6CP8 20-29 years, female 11.6
GTEX-ZTPG-2626-SM-57WFX 20-29 years, female 11.5
GTEX-16A39-1426-SM-6LLI6 30-39 years, female 10.9
GTEX-1LBAC-1526-SM-CXZKU 20-29 years, male 10.9
GTEX-1LH75-1926-SM-DIPGD 50-59 years, female 10.9
GTEX-1LGOU-1426-SM-D3L8N 20-29 years, female 10.6
GTEX-1MGNQ-2326-SM-EV7BG 40-49 years, male 10.6
GTEX-XXEK-1026-SM-4BRUW 50-59 years, male 10.4
GTEX-16NGA-1126-SM-7KFSY 40-49 years, female 10.2
GTEX-1GL5R-2026-SM-7MKHP 50-59 years, male 10.2
GTEX-1R7EV-1226-SM-DTX82 40-49 years, male 10.2
GTEX-13QBU-1926-SM-5IJEW 40-49 years, female 10.0
GTEX-1JMQK-2426-SM-CXZJU 60-69 years, male 10.0
GTEX-XAJ8-0526-SM-47JYK 40-49 years, male 9.8
GTEX-1QP28-1726-SM-E6CRK 50-59 years, female 9.8
GTEX-1GMR3-2726-SM-7MKFB 40-49 years, male 9.6
GTEX-Z9EW-0926-SM-5CVMM 40-49 years, male 9.5
GTEX-1H11D-2526-SM-9JGGU 40-49 years, male 9.5
GTEX-WHSB-1026-SM-4M1XN 50-59 years, male 9.2
GTEX-11DXZ-1326-SM-5H11X 50-59 years, male 9.1
GTEX-183FY-1626-SM-793D8 20-29 years, male 9.1
GTEX-XGQ4-1326-SM-4GIDU 50-59 years, male 9.0
GTEX-WFG7-1726-SM-4LVME 20-29 years, male 8.8
GTEX-11NSD-1726-SM-5N9C3 20-29 years, male 8.7
GTEX-WRHK-1026-SM-4MVOD 20-29 years, female 8.6
GTEX-1JJE9-2226-SM-CXZJM 70-79 years, male 8.6
GTEX-1C475-1426-SM-793CH 40-49 years, female 8.5
GTEX-WH7G-1626-SM-4LVMY 40-49 years, male 8.5
GTEX-11VI4-1626-SM-5EQKO 40-49 years, female 8.4
GTEX-ZPCL-1726-SM-57WEO 60-69 years, female 8.4
GTEX-11P82-0826-SM-5P9GU 20-29 years, male 8.3
GTEX-14PKV-2026-SM-6AJ9A 20-29 years, female 8.3
GTEX-139YR-2226-SM-5IFFW 50-59 years, male 8.1
GTEX-13FH7-1226-SM-5IJFK 50-59 years, female 8.1
GTEX-13RTK-0826-SM-5Q5C6 20-29 years, male 8.0
GTEX-1F75I-2526-SM-9WPOZ 40-49 years, male 8.0
GTEX-1JK1U-1226-SM-CNNPN 60-69 years, male 8.0
GTEX-WQUQ-2426-SM-4MVNW 60-69 years, male 7.9
GTEX-ZYFG-2026-SM-5E43Y 60-69 years, female 7.7
GTEX-1HSMQ-2226-SM-C1YRD 50-59 years, male 7.6
GTEX-13O21-1026-SM-5IJDU 50-59 years, male 7.5
GTEX-ZVP2-1726-SM-5GU5P 50-59 years, male 7.3
GTEX-1399R-2026-SM-5K7WN 30-39 years, male 7.1
GTEX-14BMU-1426-SM-5TDE5 20-29 years, female 7.1
GTEX-11XUK-1426-SM-5EQMG 40-49 years, female 6.9
GTEX-133LE-1426-SM-5IFH1 20-29 years, female 6.7
GTEX-139T6-1026-SM-5IJGC 50-59 years, male 6.7
GTEX-WY7C-1826-SM-4ONCE 50-59 years, male 6.7
GTEX-13113-1226-SM-5EGHT 60-69 years, female 6.6
GTEX-1JN76-1126-SM-C1YRL 20-29 years, female 6.6
GTEX-13FTW-2026-SM-5IJE2 40-49 years, male 6.5
GTEX-1J8QM-1026-SM-C1YQA 60-69 years, female 6.5
GTEX-11P7K-1626-SM-5GU63 30-39 years, male 6.3
GTEX-YFCO-1326-SM-664NV 40-49 years, male 6.3
GTEX-ZA64-1226-SM-5HL7B 20-29 years, male 6.3
GTEX-148VJ-2226-SM-5NQ9M 70-79 years, male 6.2
GTEX-ZF29-1626-SM-4WKFJ 60-69 years, female 6.2
GTEX-1PDJ9-1826-SM-E9U66 20-29 years, male 6.2
GTEX-1R7EU-1326-SM-E6CQ6 60-69 years, male 6.2
GTEX-11DXX-1626-SM-5H11H 60-69 years, female 6.1
GTEX-1497J-1926-SM-5TDCC 60-69 years, male 6.1
GTEX-14PJN-0826-SM-686ZL 30-39 years, male 6.1
GTEX-WFJO-0926-SM-4LVM2 30-39 years, male 6.1
GTEX-ZVT2-2126-SM-5NQ93 50-59 years, female 6.1
GTEX-14E6E-1626-SM-5RQI7 30-39 years, male 6.0
GTEX-11TUW-1926-SM-5BC58 60-69 years, male 5.9
GTEX-15G1A-1726-SM-6LPI4 30-39 years, male 5.9
GTEX-1QPFJ-2626-SM-DPRZU 30-39 years, female 5.9
GTEX-14PKU-1626-SM-6871C 40-49 years, female 5.7
GTEX-1GMR2-1026-SM-7MKHJ 50-59 years, male 5.7
GTEX-144GM-1026-SM-79OKU 20-29 years, male 5.6
GTEX-XUZC-1426-SM-4BRV3 30-39 years, female 5.6
GTEX-ZZ64-0526-SM-5GZXM 20-29 years, male 5.2
GTEX-ZVZP-1826-SM-5GZXB 50-59 years, male 5.1
GTEX-131XF-1326-SM-5GCMQ 60-69 years, male 5.0
GTEX-16AAH-1426-SM-7KFTR 50-59 years, male 5.0
GTEX-ZLFU-1526-SM-4WWBT 40-49 years, male 4.9
GTEX-145LT-1026-SM-5LU9O 40-49 years, male 4.8
GTEX-1399U-2126-SM-5IFEZ 50-59 years, female 4.7
GTEX-14PJ6-1726-SM-6AJBN 60-69 years, female 4.7
GTEX-1CAMR-0826-SM-7MKFK 20-29 years, male 4.6
GTEX-11EQ9-1326-SM-5985X 30-39 years, male 4.5
GTEX-11I78-1126-SM-5A5K5 50-59 years, female 4.5
GTEX-YB5E-1526-SM-5IFIE 40-49 years, male 4.3
GTEX-YEC4-1726-SM-4W21E 40-49 years, male 4.3
GTEX-YF7O-1826-SM-5IFIU 50-59 years, male 4.3
GTEX-ZLWG-1626-SM-DNZZ1 50-59 years, female 4.2
GTEX-X5EB-1626-SM-4E3IV 40-49 years, male 4.1
GTEX-ZTX8-0526-SM-59HLD 20-29 years, male 4.1
GTEX-13D11-0726-SM-5LZZB 50-59 years, female 3.9
GTEX-ZG7Y-1926-SM-DNZZ5 50-59 years, male 3.9
GTEX-13O61-1326-SM-5KM31 60-69 years, male 3.8
GTEX-ZXES-1526-SM-5NQ95 30-39 years, female 3.8
GTEX-1B8KE-1726-SM-7IGMN 50-59 years, male 3.7
GTEX-12BJ1-1926-SM-5HL9Z 60-69 years, male 3.6
GTEX-13PL7-2626-SM-5IFH4 60-69 years, female 3.6
GTEX-16MTA-1526-SM-6LPJB 50-59 years, male 3.6
GTEX-ZLV1-1126-SM-4WWBW 60-69 years, female 3.5
GTEX-ZDTT-1726-SM-5HL69 60-69 years, male 3.4
GTEX-1399S-2026-SM-5KM4B 30-39 years, female 3.3
GTEX-14DAR-1426-SM-5RQIR 50-59 years, male 3.3
GTEX-Y9LG-1626-SM-5IFHM 30-39 years, male 3.2
GTEX-ZTSS-0926-SM-59865 40-49 years, male 3.2
GTEX-1122O-1326-SM-5H11F 60-69 years, female 3.1
GTEX-1AMFI-1926-SM-731F2 50-59 years, female 3.0
GTEX-1QP2A-2426-SM-EXOJA 50-59 years, male 3.0
GTEX-14PN3-2026-SM-68729 60-69 years, female 2.9
GTEX-1J8Q3-2526-SM-CNNQ4 60-69 years, male 2.6
GTEX-111YS-1426-SM-5GID8 60-69 years, male 1.5
Show allShow less

SMALL INTESTINE - FANTOM5 CAGEi

RNA expression in human tissues obtained through Cap Analysis of Gene Expression (CAGE) generated by the FANTOM5 project are reported as Scaled Tags Per Million.

Read more
Max Scaled Tags Per Million 8.6
FANTOM5 sample id Sample description Scaled Tags Per Million
Small intestine
Scaled Tags Per Million: 8.6
FF:10024-101D6 15,40,85 years, mixed 8.6

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